PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015784m | ||||||||
Common Name | EUTSA_v10015784mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 23899 Da PI: 7.5012 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.4e-20 | 67 | 121 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Lee F+++ +++++++ +L+++lgL+ rq+ vWFqN+Ra++k Thhalv10015784m 67 KKKKRLTNEQLASLEESFQEDIKLDTDRKMKLSRELGLQPRQIAVWFQNHRARWK 121 67788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.7 | 1.4e-37 | 67 | 155 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq+++LEesF+e+ kL+++rK++l+reLglqprq+avWFqn+RAR+k ++lE+ y++L+++yda+++en++L++ev++Lr Thhalv10015784m 67 KKKKRLTNEQLASLEESFQEDIKLDTDRKMKLSRELGLQPRQIAVWFQNHRARWKVRHLEESYDSLRQEYDAVSRENQMLHDEVRKLRG 155 59*************************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-18 | 54 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-17 | 65 | 127 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-17 | 67 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-16 | 67 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 69 | 131 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.9E-7 | 125 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEWSTTSNVE NMRVAFMPPP WLESNSNLFH SLNYDPYAGN SSTPVLRQTG PVISVQCPSN 60 NDEMMVKKKK RLTNEQLASL EESFQEDIKL DTDRKMKLSR ELGLQPRQIA VWFQNHRARW 120 KVRHLEESYD SLRQEYDAVS RENQMLHDEV RKLRGIILKD HLMRCQSDQN SNQISGGSQI 180 YGVGQYSIPT FVASPCCPPI SHPPYPC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10015784m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398837.1 | 1e-156 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 4e-86 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | V4KQT4 | 1e-155 | V4KQT4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398837.1 | 1e-155 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-88 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015784m |
Entrez Gene | 18017927 |
Publications ? help Back to Top | |||
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