PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013890m
Common NameEUTSA_v10013890mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 366aa    MW: 41743.2 Da    PI: 8.1371
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013890mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.26.4e-1279115339
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                      ++k++rr+++NReAAr+sR+RKka++++Le+   +L 
  Thhalv10013890m  79 PDKVQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 115
                      68****************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-677140IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.81879121IPR004827Basic-leucine zipper domain
PfamPF001706.9E-979110IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-781116No hitNo description
CDDcd147081.48E-2181132No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-783109No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
PfamPF141443.2E-30167242IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNTTSTHFVT PRRFEIYEPL NQIGMWEESF KNNGGMYTPN SIIIPTNEKP DSLSEDTSHG  60
TEGTTPHKFD QEASTSRHPD KVQRRLAQNR EAARKSRLRK KAYVQQLETS RLKLIQLEQE  120
LDRARQQGFY VGNGVDTNAL GFSDNISSGI VAFEMEYGHW VEEQNRQISE LRTVLHGQVS  180
DVELRSLVET AMKHYVQLFR MKSAAAKIDV FYIMSGMWKT SAERFFLWIG GFRPSELLKV  240
LLPHFDPLTD QQVLNVCNLR KSCQQAEDAV SQGMEKLQHT LTESVAAGKL GEGSYIPQIT  300
CAMERLEALV SFVNHADHLR HETLQQMHRI LTTRQAARGL LALGEYFQRL RALSSSWATR  360
QREPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013890m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530850.0AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399493.10.0transcription factor TGA4
RefseqXP_024012136.10.0transcription factor TGA4
RefseqXP_024012137.10.0transcription factor TGA4
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLE4MX380.0E4MX38_EUTHA; mRNA, clone: RTFL01-10-F22
TrEMBLV4N5Z60.0V4N5Z6_EUTSA; Uncharacterized protein
STRINGXP_006399493.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]