PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013864m
Common NameEUTSA_v10013864mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 371aa    MW: 40480.9 Da    PI: 7.6032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013864mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043159181123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Thhalv10013864m 159 YQCKTCDRTFPSFQALGGHRASH 181
                      9***********99999998887 PP
2zf-C2H213.10.00029237259123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Thhalv10013864m 237 HECGICGAEFTSGQALGGHMRRH 259
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-8158181No hitNo description
PfamPF139122.1E-12158183IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471159186IPR007087Zinc finger, C2H2
SMARTSM003550.028159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-8232259No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4235261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11236261IPR007087Zinc finger, C2H2
SMARTSM003550.047237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93237261IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PIPFSISPAI VSSPAGEEST DLDSKDNALG  60
INVENRKKDG VITSSSSSAS WSSNNNQTLK TVEDEEDQDI ANCLMLLAQG HSLPNHNQQL  120
KIPYHETNNN NNNAYRFSSR RFLETSSSNG GGKAGYYVYQ CKTCDRTFPS FQALGGHRAS  180
HKKPKATSFY SNLDLKKNIY ENDAVSLATT TTIYNNTKNN SNRSLVVYGK AGNNKVHECG  240
ICGAEFTSGQ ALGGHMRRHR GAVVVAAAAP PTVTVATAAA NTELSLSSMS FDQISDGQDH  300
LVMPATKRAK KTVVSLDLDL NLPAPEDENR VNGFNFVVKE KQEQEHQQNK QREEPESLVL  360
SAPTLVDCHY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013864m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398898.10.0zinc finger protein ZAT5
TrEMBLV4N4N10.0V4N4N1_EUTSA; Uncharacterized protein
STRINGXP_006398898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-173C2H2 family protein