PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10013428m | ||||||||
Common Name | EUTSA_v10013428mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 477aa MW: 52676.1 Da PI: 4.6983 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116 | 2.3e-36 | 28 | 120 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++e++sws+ +nsfvv++ ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+ Thhalv10013428m 28 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKKLLK 112 9****************************************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i r+k + Thhalv10013428m 113 SISRRKPS 120 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 8.98E-35 | 23 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.4E-39 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.1E-60 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.2E-31 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MESVPESVPS ANSNSSSGPP PVNSVPPFLS KTYDMVDDPS TNEVVSWSSG NNSFVVWNVP 60 EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKKL LKSISRRKPS 120 HVQQNQQQTQ VQNSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATEHQLQ 180 NVGQKVQVME QRQQQMMSFL AKAVQSPGFL NQLVQQNNDG NRQIPGSNKK RRLPGDEQEN 240 RGGHGANGLN SQIVKYQPSI NEAAQTMLRQ FLNTSSSPRY ESVSNNPGSF LLGDVPSSNS 300 VDNGNSSNTV SGVTFPEVSS NSAHSGMNQI HEASLDHHPQ AKLVQPNLSP SPTQGVAAAA 360 SWSPESDLVG CETGNGECFD PIMAVLDASL EMEGDAVSPE GDGEINELLN GNPKLPGVQD 420 PFWEQFFTDE IPVTGDTDEN SDLVMEQEPN DWTRNQQQMN HLTEQMGLLS SETQMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-25 | 15 | 117 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 15 | 117 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 15 | 117 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10013428m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400223.1 | 0.0 | heat stress transcription factor A-1b | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | V4N7P1 | 0.0 | V4N7P1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400223.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10013428m |
Entrez Gene | 18018815 |
Publications ? help Back to Top | |||
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