PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013048m
Common NameEUTSA_v10013048mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 592aa    MW: 66536.7 Da    PI: 7.0022
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013048mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.51e-29121206187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r  ++ +++++f+qlea
  Thhalv10013048m 121 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 206
                      8*************************************999*****************************98..55667*******85 PP
2trihelix61.81.7e-19424509182
         trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                      +W +qe+ +L+e+r+++++++++   g++++ lWeev++k+ + gf +rs+ +Ckekwe +++ ++k+k++ +k+++e+ss+c  +
  Thhalv10013048m 424 CWNEQEIIKLMEIRTSLDSAFQEilgGCSDEFLWEEVAAKLIQLGFeQRSALMCKEKWECISNGMRKEKKQINKKRKENSSSCGVY 509
                      7*********************98889*******************779********************99999999999999655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.12118181IPR001005SANT/Myb domain
PROSITE profilePS500906.98120179IPR017877Myb-like domain
PfamPF138372.6E-20121207No hitNo description
CDDcd122032.82E-19121186No hitNo description
SMARTSM0071712421487IPR001005SANT/Myb domain
PfamPF138372.2E-12423510No hitNo description
CDDcd122031.15E-16423492No hitNo description
PROSITE profilePS500906.191425485IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MEDHHTQYGI PELRQLMKGE GRTITTASPS TSSHFPSDFF GFNLAPAAPP QHHRLHQFTA  60
DHQEMGFLPR GIHGLGGGSS TAASNSNLNA STSGGGVGFS GFLDGGGYGG GGGGDGGGTG  120
RWPRQETLTL LEIRSRLDHK FKEANQKGPL WDEVSRIMSE EHGYQRSGKK CREKFENLYK  180
YYRKTKEGKA GRQDGKHYRF FRQLEALYGD SNNLVSCTNH NTQFMSNALH GFHTQAAMNA  240
TTTTSNIHNV DSVHGFHHQS LSLSNNYNSS ELELMTSSSE GNDSSSRRKK RSWKAKIKEF  300
IDVNMKRLIE RQDVWLEKLT KVIEDKEEQR MMKEEEWRKI EAARIEKEHL FWAKERERME  360
ARDVAVIEAL QYLTGKSLIK PLCSSPEERI NGNNEIQKNS ENQNDNGSDQ TMTNNVSIKG  420
SGSCWNEQEI IKLMEIRTSL DSAFQEILGG CSDEFLWEEV AAKLIQLGFE QRSALMCKEK  480
WECISNGMRK EKKQINKKRK ENSSSCGVYY PRNDENPIYN NQESGYNDND QHHQMNEHGN  540
VCSSTSNANA TAGNPSGAMA AGTNCFPFFM GDGDQNLWES YGLRLSKGEN Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013048m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5557280.0AY555728.1 Arabidopsis thaliana trihelix transcription factor (PETAL LOSS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398825.10.0trihelix transcription factor PTL isoform X1
SwissprotQ9LZS00.0PTL_ARATH; Trihelix transcription factor PTL
TrEMBLV4LKD80.0V4LKD8_EUTSA; Uncharacterized protein
STRINGXP_006398825.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.10.0Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]