PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013018m
Common NameEUTSA_v10013018mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 603aa    MW: 66665.8 Da    PI: 7.4667
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013018mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-152976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
  Thhalv10013018m 29 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 76
                     79******************************************9986 PP
2Myb_DNA-binding46.21e-1482125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++
  Thhalv10013018m  82 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 125
                      789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.982476IPR017930Myb domain
SMARTSM007171.6E-122878IPR001005SANT/Myb domain
SuperFamilySSF466896.25E-2828123IPR009057Homeodomain-like
PfamPF002492.7E-142976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-213083IPR009057Homeodomain-like
CDDcd001674.02E-103176No hitNo description
PROSITE profilePS5129424.47877131IPR017930Myb domain
SMARTSM007172.5E-1581129IPR001005SANT/Myb domain
PfamPF002492.0E-1382125IPR001005SANT/Myb domain
CDDcd001671.02E-1084127No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2484129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MILYGGGAGK DGGSTNHISD GGGGVVLKKG PWTAAEDEIL AAYVRENGEG NWNAVQKNTG  60
LARCGKSCRL RWANHLRPNL KKGSFTGDEE RLIIQLHAQL GNKWARMAAQ LPGRTDNEIK  120
NYWNTRLKRL QRQGLPLYPP DIIPNHQLHP HPHHHQHHHH QHNHHQHQQH HQHQHQHQHH  180
QHQQMYFQPQ SSQPNTPSSS PLPSPTPVNA NPSSSFTFHT TNASTANLLH PLSPHTPNTP  240
QTPSQLSSTP PPPPLSSPLS SPRNNQYPTL PLFALPRSQI NNNNNNANFT FPRPPPLLQQ  300
PSTLLAKRYN NANAPPFNCI NRVSTAPFSP VSRDSYTSFL TLPFSSPTAQ TAQTATYHNS  360
NNNYSSSPSF SLNPSPSSYP TATSSPSFLH SHYTPPSSTS FQTNPVYSNM KQELPSNQVS  420
QVNSFNVNNF TNDNEKQNSV SIHRRSISCS LLEDVLEEAE ALAGGGGDRP PKRRQLTASP  480
PNHHNSNNNN NNDNFFSVSF GQYDSSENLC SLQDLKSKEE EYLQMNTMQE DIAKLLDWGS  540
DSGEISNGQS SVVTDDNLVL DVHQFASLFP ANSTAPATAT NDEHNNNNNN NNCSWDDLHG  600
IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-28261291103C-Myb DNA-Binding Domain
1msf_C2e-28261291103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1468473RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013018m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401500.10.0transcription factor MYB120
SwissprotQ94FL70.0MY120_ARATH; Transcription factor MYB120
TrEMBLV4LST90.0V4LST9_EUTSA; Uncharacterized protein
STRINGXP_006401500.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.11e-149myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]