PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012731m
Common NameEUTSA_v10012731mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 788aa    MW: 90511.9 Da    PI: 7.7914
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012731mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.7e-2156130189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  Thhalv10012731m  56 EFYNAYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 130
                      6***************************************876..............589***************************98 PP
2FAR167.63.2e-21227303191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      +fY++YA+ vGF+vr+ +  +sk +++it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnHel p
  Thhalv10012731m 227 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 303
                      6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1656130IPR004330FAR1 DNA binding domain
PfamPF031011.2E-16227303IPR004330FAR1 DNA binding domain
PfamPF105511.3E-25399491IPR018289MULE transposase domain
PROSITE profilePS5096610.361673709IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-7681706IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-8684711IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MESADTELNS FNNMVAKAYP IRILNHNNGI NEDEQGGSRV EPYVGLEFDT AEEAREFYNA  60
YATRTGFKVR TGQLYRSRTD GTVSSRRFVC SKEGFQLNSR TGCTAFIRVQ RRDTGKWVLD  120
QIQKEHNHEL GGEAHVEETT TPRPSRAPAP TKLAVTVNPH RPKMKVVDES DREKRSSTGS  180
FKRLKGGGGG GEGEVSNGHH ATQQTKAVSG SEPYAGLEFG SANEACQFYQ AYAEVVGFRV  240
RIGQLFRSKV DNSITSRRFV CSREGFQHPS RMGCGAYMRI KRQDSGGWIV DRLNKDHNHE  300
LEPGKKNEEG LKKIPDDVTG GLDSVDLIEL KDFGNKKIRE NRVGKEWYPL LLDYFQSKQT  360
EDMGFFYAVE LDVNNGSCMS VFWADSRARF ACSQFGDSIV FDTSYRKGNY SVPFATFVGF  420
NHHRQPVLLG CAMVADESKE AFLWLFQTWL RAMSGRRPRS VVADQDLPIQ QALSQVFPGA  480
HHRFSAWQIR EKERENLRLF PSEFKYEYEK CIYQTQTIVE FDSVWSTLIN KYGLRDDIWL  540
REIYEHRENW VPAYLRASFF AGIPINGTVE TFFGASLDAL TPLREFISRY EQGLEQRREE  600
ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYNYLCL KTYEEGAISR  660
FLVRKCGNES EKHAVTFSAS NLNSSCSCQM FEHEGLLCRH ILKVFNLLDI REIPSGYILH  720
RWTKNAEFGF VRDMESGVSS QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG  780
KKLCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012731m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400450.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLV4LPW90.0V4LPW9_EUTSA; Uncharacterized protein
STRINGXP_006400450.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]