PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012253m
Common NameEUTSA_v10012253mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 103aa    MW: 11731.5 Da    PI: 8.4367
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012253mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.5e-11896289
                     EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                     +k+ t+ dv+ ++ l+l+k+ ++ +      +++e++ ++ ++d + +s+ v+l  +++s++y  ++GW++  +a++L+  D+v ++ ++ ++
  Thhalv10012253m  8 VKKITNTDVSCKNGLSLSKPKMDYIlrkmgISVPENGLQVEIQD-NDKSYWVTL--KQNSNGYHVGTGWSNIKNAKDLEKDDVVQLYWKD-TK 96
                     6999******************5559999866677888888888.55777799*..9***************************999543.43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-13396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-12394IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-47102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDPNMLIVKK ITNTDVSCKN GLSLSKPKMD YILRKMGISV PENGLQVEIQ DNDKSYWVTL  60
KQNSNGYHVG TGWSNIKNAK DLEKDDVVQL YWKDTKFIFS ME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012253m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867663.12e-38B3 domain-containing protein At1g08985
SwissprotQ8GWU19e-35Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLV4KTT32e-68V4KTT3_EUTSA; Uncharacterized protein
STRINGXP_006393487.13e-69(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.14e-37B3 family protein