PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10012253m | ||||||||
Common Name | EUTSA_v10012253mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | B3 | ||||||||
Protein Properties | Length: 103aa MW: 11731.5 Da PI: 8.4367 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.9 | 5.5e-11 | 8 | 96 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+ t+ dv+ ++ l+l+k+ ++ + +++e++ ++ ++d + +s+ v+l +++s++y ++GW++ +a++L+ D+v ++ ++ ++ Thhalv10012253m 8 VKKITNTDVSCKNGLSLSKPKMDYIlrkmgISVPENGLQVEIQD-NDKSYWVTL--KQNSNGYHVGTGWSNIKNAKDLEKDDVVQLYWKD-TK 96 6999******************5559999866677888888888.55777799*..9***************************999543.43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.82E-13 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-12 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-4 | 7 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MDPNMLIVKK ITNTDVSCKN GLSLSKPKMD YILRKMGISV PENGLQVEIQ DNDKSYWVTL 60 KQNSNGYHVG TGWSNIKNAK DLEKDDVVQL YWKDTKFIFS ME* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10012253m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867663.1 | 2e-38 | B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 9e-35 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | V4KTT3 | 2e-68 | V4KTT3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393487.1 | 3e-69 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 4e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10012253m |
Entrez Gene | 18010477 |