PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10010633m | ||||||||
Common Name | EUTSA_v10010633mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | B3 | ||||||||
Protein Properties | Length: 271aa MW: 31114.4 Da PI: 4.5669 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.2 | 2e-20 | 13 | 100 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ + ++s +++p +f e+ + + ++t +l + g W+v + +k+++r+++t+GW++F+++++Lk+g+f++F +dg ++f v Thhalv10010633m 13 FFKVF--LSETSSESMRIPVSFNEHLEDP--LPRTAKLHGTGGGIWTVGF--TKRRKRVYFTDGWSKFAEDHDLKDGEFLTFVYDGYHTF--EV 98 89999..777777779******9655655..899****************..********************************998888..55 PP EE CS B3 95 kv 96 +v Thhalv10010633m 99 SV 100 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-23 | 10 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.17E-21 | 11 | 102 | No hit | No description |
SuperFamily | SSF101936 | 1.02E-23 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.592 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-22 | 13 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-17 | 13 | 99 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.682 | 175 | 270 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-8 | 176 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-11 | 177 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.024 | 179 | 267 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MSETEDDAVL PRFFKVFLSE TSSESMRIPV SFNEHLEDPL PRTAKLHGTG GGIWTVGFTK 60 RRKRVYFTDG WSKFAEDHDL KDGEFLTFVY DGYHTFEVSV YDGLGCKETR AVTEAVELSD 120 ADSDSDEEEE EDPSVKGEDD SSYAEDEEVS QSNYTVDSEG TESDSSDISD LVVTTNPWFK 180 TNLKNRTYEL LIPAKLAREY RLKFGESITY IDEEGTMVGI RVRWSDDRIC FKGWDRICRR 240 NRLNKQDQVI CEMLHNRKLV HTIKIHIKRG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-20 | 12 | 106 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10010633m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403705.1 | 0.0 | B3 domain-containing protein REM20 | ||||
Swissprot | Q8LAV5 | 4e-93 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | V4LZ34 | 0.0 | V4LZ34_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403705.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-85 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10010633m |
Entrez Gene | 18021603 |
Publications ? help Back to Top | |||
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