PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10010412m

Common Name

EUTSA_v10010412mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 419aa MW: 46257.5 Da PI: 6.9731

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10010412m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	99	159	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Thhalv10010412m 99 PTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 159 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	96	156	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-32	101	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.556	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MMMESRDPAI KLFGMKIPFP AVFESTVAVE EEEEEEFSGG DGGEVKSAGK LTPELSDKCN 60 DNSHDKEEAT STDQIEISDS PEDNHQQQTT TDGKILKKPT KILPCPRCKS METKFCYYNN 120 YNINQPRHFC KACQRYWTAG GTMRNVPVGA GRRKNKSSSS SHYRHITISE ALEAARLDPG 180 LQANTRVLSF GLEAPVKLQG DQKVSNGVRN GLVARVENGD DCSTGSSVTT SNNNHHSVDE 240 TRAQSCRVVE PQTNNNNNNM SGYACIPGVP WPYTWNPPMP PPGFYPPPGY PMPFYPYWTI 300 PMLSSPMSQK GSSPTLGKHS RDEESAREEN ETERKQQRNG CVLVPKTLRI DDPNEAAKSS 360 IWTTLGIKNE AMSKGGMFKG FDQKTKKNHN NNDKAENSPV LSANPAALSR SLNFQEGI*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MMMESRDPAI KLFGMKIPFP AVFESTVAVE EEEEEEFSGG DGGEVKSAGK LTPELSDKCN  60
DNSHDKEEAT STDQIEISDS PEDNHQQQTT TDGKILKKPT KILPCPRCKS METKFCYYNN  120
YNINQPRHFC KACQRYWTAG GTMRNVPVGA GRRKNKSSSS SHYRHITISE ALEAARLDPG  180
LQANTRVLSF GLEAPVKLQG DQKVSNGVRN GLVARVENGD DCSTGSSVTT SNNNHHSVDE  240
TRAQSCRVVE PQTNNNNNNM SGYACIPGVP WPYTWNPPMP PPGFYPPPGY PMPFYPYWTI  300
PMLSSPMSQK GSSPTLGKHS RDEESAREEN ETERKQQRNG CVLVPKTLRI DDPNEAAKSS  360
IWTTLGIKNE AMSKGGMFKG FDQKTKKNHN NNDKAENSPV LSANPAALSR SLNFQEGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10010412m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353042	0.0	AK353042.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-P18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404373.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	0.0	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	E4MWZ5	0.0	E4MWZ5_EUTHA; mRNA, clone: RTFL01-09-P18
TrEMBL	V4NHY4	0.0	V4NHY4_EUTSA; Uncharacterized protein
STRING	XP_006404373.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-170	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Thhalv10010412m
Entrez Gene	18020881

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]