PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010353m
Common NameEUTSA_v10010353mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 465aa    MW: 48725.2 Da    PI: 10.2729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010353mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-056183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Thhalv10010353m 61 FVCEICSKGFQRDQNLQLHRRGH 83
                     89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-66083No hitNo description
Gene3DG3DSA:3.30.160.605.5E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8876183IPR007087Zinc finger, C2H2
SMARTSM003550.0366183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355270102132IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.21E-6132157No hitNo description
SMARTSM00355190137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQNPLLKSS GKKKRNLPGM PDPESEVIAL SPKTLLATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QKSSKEVRKK VYVCPEISCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVVS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARSHNNPS KKQNPVVLPR KKPVPDPKSV AAANSPSSPN LAPVDTQSAK  240
IKSPPIKRSE SPKTPPETLQ EAPKPTGLNV TRNGVFAGLF ESSSASPSIY TSSSSSSSSS  300
QSLFAPSSSI EPISLGLSTS HGSSFLGSTR FPTQPAMSAT ALLQKAAQMG ATSSGGSLLR  360
GLGIVSSSSP SMDSIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT TLDFLGLGRA  420
VGNGGGGPGN GLSALVGGTG GVDVAAAFGS GEFSVKDIGR RTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34133198372Zinc finger protein JACKDAW
5b3h_F3e-34133198372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQKSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010353m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404010.10.0protein indeterminate-domain 2 isoform X1
SwissprotQ9SCQ60.0IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLE4MXG30.0E4MXG3_EUTHA; mRNA, clone: RTFL01-27-D18
TrEMBLV4LZV90.0V4LZV9_EUTSA; Uncharacterized protein
STRINGXP_006404010.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]