PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009489m | ||||||||
Common Name | EUTSA_v10009489mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C2H2 | ||||||||
Protein Properties | Length: 317aa MW: 35807.3 Da PI: 6.3193 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 108 | 127 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Thhalv10009489m 108 FSCSVCNKTFNRFNNMQMHM 127 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.85E-5 | 102 | 130 | No hit | No description |
PROSITE profile | PS50157 | 10.263 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 108 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 179 | 214 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MYNSNLYCIS GDEDSVVLSL GLPGQQYPNH HKPTNTKPAS SNHPIDHHEF DNLPLTNPND 60 VTVALHIGPP VSDKETTTGG SNQEGLTARQ GQYWIPSLSQ ILVGPTQFSC SVCNKTFNRF 120 NNMQMHMWGH GSQYRKGPES LRGTKSSSSI LRLPCYCCAE GCKNNIDHPR SKPLKDFRTL 180 QTHYKRKHGA KPFRCRKKCE KMFAVRGDWR THEKNCGKLW FCVCGSDFKH KRSLKDHVRA 240 FGDGHAAHTV GDRVLAIGDG DEDDDDDDDD DDDMEEEEAE DERDDDGEEE DGNGENGRGD 300 KNYGIRYDHF RRYGHF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10009489m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311809 | 0.0 | AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417136.1 | 0.0 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-179 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | V4KVY0 | 0.0 | V4KVY0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417136.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-175 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009489m |
Entrez Gene | 18993539 |