PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008194m
Common NameEUTSA_v10008194mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SRS
Protein Properties Length: 326aa    MW: 35829.5 Da    PI: 9.7948
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008194mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702232.2e-072898574
           DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskr 74
                     + +C +CGn a+  C ++ C+ CC   +  C  hv      aa   e+ q+ +++ss+++as+    ++ +  +
  Thhalv10008194m 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKA---AATSAEKTQAPSTPSSDQKASEgtpgSTTRVSS 98
                     568*******************************9654...333334433444433333333322222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-630103IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSASSPSLSN NGLSAAVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI  60
HVLKAAATSA EKTQAPSTPS SDQKASEGTP GSTTRVSSIR QLSSNFAQFN NLNAASRQRK  120
PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAFSLT SVPEESPGAA  180
ASERSNEERT VSELKLRLRS NSARTESIKK RIAETVKAGL VKVQKPVLSG KSDDQDEIER  240
RIKRSKWEEK TSALNEVIDK VNKARTEEDL KFCFEMKSKL CGQVSSNAAS GKNMVSGLVR  300
KVEISEEALQ KIGEHLKSFD KVETL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008194m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934920.0AB493492.1 Arabidopsis thaliana At1g32730 mRNA for hypothetical protein, partial cds, clone: RAAt1g32730.
GenBankAY0847500.0AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415156.10.0uncharacterized protein LOC18991770
TrEMBLV4KQH00.0V4KQH0_EUTSA; Uncharacterized protein
STRINGXP_006415156.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73621317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.10.0