PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10008115m | ||||||||
Common Name | EUTSA_v10008115mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 343aa MW: 38339.9 Da PI: 8.11 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.7e-32 | 210 | 265 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Thhalv10008115m 210 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVNGLTNDEVKSHLQKYRLH 265 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.509 | 207 | 267 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 208 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.89E-18 | 208 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-26 | 210 | 265 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 212 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MIKIGFTEDY TLKMKRCHDY VEALEQEQKK IQVFQRELPL CLELVTQEIQ SCRKELSEFS 60 TTSEQVHGQS ECSERTTSES GDGAAVFEEF MPIKLNSSSS NEHESTCEPN KDDGAENNGD 120 KKKSDWLRSV QLWNQPKEDQ TTTVVVDGKR NGGAFQPFHK EKPVVAAAAK ADSQPVKAIT 180 PTPTTSSSTA ETVGSKREPE NHKHSQMHRK QRRCWSPELH RRFLHALQQL GGSHVATPKQ 240 IRDLMKVNGL TNDEVKSHLQ KYRLHTRRPA TPAMTNGGEN PQQPQFMVVE GIWVPSHDAA 300 NRVYAPVAVQ PPLASPSEDR SSRRCKSPTT SSTHTAHLLP LS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10008115m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415885.1 | 0.0 | transcription factor HHO3 | ||||
Swissprot | Q9FPE8 | 1e-151 | HHO3_ARATH; Transcription factor HHO3 | ||||
TrEMBL | V4L3B6 | 0.0 | V4L3B6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415885.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-146 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10008115m |
Entrez Gene | 18992423 |
Publications ? help Back to Top | |||
---|---|---|---|
|