PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007639m
Common NameEUTSA_v10007639mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 445aa    MW: 50404.7 Da    PI: 6.5166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007639mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-11259301754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er+RRdriN+++  Lr ++P       +K++K+ i   Av+YI++L
  Thhalv10007639m 259 HSERKRRDRINQRMYALRAVVPRI-----TKMNKIGIFSDAVDYINEL 301
                      57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-1410157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.67E-15250313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-11250306No hitNo description
PROSITE profilePS5088814.881252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13259315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8259301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMKSGERVKE FLRPFVDSRD WDLCVIWKLG DDPSRFIEWV GCCCSGSHID KNIKHEKVEE  60
GIERKQTGSI CRDEHNKHYI RSLACEALTH FPLFMPLYPG IHGEVVMSKS PKWLVNSGPG  120
SKKDIFSTRV LIPVRDGLVE LFSFTMKPVD ESMVDMIIRR CNACFEPFPE QKLQFRIISK  180
AEESMSSGVN LSFEGGGSSS VSNPLSENQT LFGNQNARCG EHLPCLVVNK EEDVVMQDTI  240
DLKDNKKPPK ENFKSKNLHS ERKRRDRINQ RMYALRAVVP RITKMNKIGI FSDAVDYINE  300
LLVEKQKLED ELSGINEIEC REIAAEEESA IANPEAEKVS SKVNKKVNDE VNFEVHEIGE  360
RDFLIRVAQE HKRDGFKRLI EAVDSCGLEI IDVNFTRLDL TVMTVLNVKA NKDGISAGNL  420
RDLLLKRMIA SNNPNAESVK QSST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007639m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417445.10.0transcription factor bHLH90
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLV4L7P90.0V4L7P9_EUTSA; Uncharacterized protein
STRINGXP_006417445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein