PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006385m

Common Name

EUTSA_v10006385mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 353aa MW: 39429.3 Da PI: 4.7737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006385m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.8e-07	195	239	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n Er+ R++iN+++ +L++llP++ K + + L +A++Y+ Lq Thhalv10006385m 195 NSPERKERNDINKKMRTLQDLLPNS-----HKDDNESLLDEAINYMTTLQ 239 6779******************8.....699***********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-8	184	243	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-10	186	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.148	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-12	190	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-5	195	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-5	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MFLPSDDYCC RLTDKEYLEL VFENGQILAK SQRSNGFSQQ NQRTKTIMDL YEAEYNEDFK 60 KSIHDGGFIK NLGETQVVPE HQVVAAYETN MLESNNKHVD ESTLIQTLKA SSSKRIVVDH 120 ENPQIIEFIP PDEQSVVAER SVYSAFDSTD FTEDSGGSSY LSSSLDDESD GGRLRVPEKT 180 GKASVKRRRS KELYNSPERK ERNDINKKMR TLQDLLPNSH KDDNESLLDE AINYMTTLQL 240 QVQMITMGNR FATPAMSLPL GSHYSQMGLA TGMPMSVPQF LPTPFLGAGL PGISHSEDML 300 RFLSHPGLMP IQNSALFTPM ENCLPQSVPP SCAAFPNQIP NLDDARTVGG FLS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MFLPSDDYCC RLTDKEYLEL VFENGQILAK SQRSNGFSQQ NQRTKTIMDL YEAEYNEDFK  60
KSIHDGGFIK NLGETQVVPE HQVVAAYETN MLESNNKHVD ESTLIQTLKA SSSKRIVVDH  120
ENPQIIEFIP PDEQSVVAER SVYSAFDSTD FTEDSGGSSY LSSSLDDESD GGRLRVPEKT  180
GKASVKRRRS KELYNSPERK ERNDINKKMR TLQDLLPNSH KDDNESLLDE AINYMTTLQL  240
QVQMITMGNR FATPAMSLPL GSHYSQMGLA TGMPMSVPQF LPTPFLGAGL PGISHSEDML  300
RFLSHPGLMP IQNSALFTPM ENCLPQSVPP SCAAFPNQIP NLDDARTVGG FLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006385m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402414.2	0.0	transcription factor PIF6 isoform X1
Swissprot	Q8L5W7	1e-167	PIF6_ARATH; Transcription factor PIF6
TrEMBL	V4LN14	0.0	V4LN14_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006402414.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13423	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62090.2	1e-163	phytochrome interacting factor 3-like 2

Link Out ? help Back to Top
Phytozome	Thhalv10006385m
Entrez Gene	18019842

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Adams E,Diaz C,Hong JP,Shin R 14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs. Int J Mol Sci, 2014. 15(12): p. 22801-14 [PMID:25501334] Galvão VC,Collani S,Horrer D,Schmid M Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana. Plant J., 2015. 84(5): p. 949-62 [PMID:26466761] Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery. ACS Nano, 2016. 10(1): p. 225-37 [PMID:26618393] Ochoa-Fernandez R, et al. Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol. Biol., 2016. 1408: p. 125-39 [PMID:26965120] Gangl R,Tenhaken R Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark. Front Plant Sci, 2016. 7: p. 1115 [PMID:27507985] Paik I,Kathare PK,Kim JI,Huq E Expanding Roles of PIFs in Signal Integration from Multiple Processes. Mol Plant, 2017. 10(8): p. 1035-1046 [PMID:28711729]