PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005860m
Common NameEUTSA_v10005860mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 578aa    MW: 63588 Da    PI: 7.7135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-08255275526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Thhalv10005860m 255 PCPEFRK-GSCPKGDSCEYAHG 275
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1262152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0370100IPR002110Ankyrin repeat
PROSITE profilePS5029712.72670171IPR020683Ankyrin repeat-containing domain
PfamPF136374.0E-671124No hitNo description
Gene3DG3DSA:1.25.40.201.6E-1371172IPR020683Ankyrin repeat-containing domain
CDDcd002041.99E-1272168No hitNo description
SMARTSM0024823105140IPR002110Ankyrin repeat
SMARTSM002481500141177IPR002110Ankyrin repeat
PROSITE profilePS5010313.976250277IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5250276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-6255276IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5255275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4282314IPR000571Zinc finger, CCCH-type
SMARTSM0035643285308IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812285309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MCSGPKSNLC SSRTLTEIEL RKEETMGLLE FAACDDLQSF KREIEEKGLD LDQPGLWYCK  60
RVGSNKMGLE ERTPLMVAAM YGSKKVLNFI ISTRKADVNR ACGEERVTAL HCAVAGCSVN  120
MIEVIITLLD ASALANSVDA NGNQPLDLFV RVSRFVATPR KKTVEMLLRG GGGLINEAVE  180
EEEEEIKIVS KYPADASLPD INEGVYGSDE FRMYSFKVKP CSRAYSHDWT ECAFVHPGEN  240
ARRRDPRKYP YTCVPCPEFR KGSCPKGDSC EYAHGVFESW LHPAQYKTRL CKDETGCARK  300
VCFFAHKREE MRPVNASTGS AVAQSPFSSL EMMPCLSPLA YSSGVSTPPV SPMANGVGSS  360
PRSGGSWQNR VNTLTPPALQ LNGGSRLKST LSARDMDMEM EMELRLRGFG NVEETFGSYV  420
SSPSRKSQIG QSMNQHYPSS PVRPAPSHHG FDSSAAVAAA VMNARSSAFA KRSLSFKPAA  480
QAAATPTSLS DWGSPSGKLE WGMQGEELNK MRRSVSFGIH GNNNDVARDY RNEPDVSWVN  540
SLVKDSVVSE RGFGMNERVR ILSWAEQMYR EKEQTVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005860m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403038.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLV4NEL10.0V4NEL1_EUTSA; Uncharacterized protein
STRINGXP_006403038.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]