PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005455m
Common NameEUTSA_v10005455mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 453aa    MW: 48982.3 Da    PI: 4.6552
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005455mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.92.7e-37136234298
           DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+
  Thhalv10005455m 136 LFQRLWTDEDEIELLRGFLDYiTSHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISR 229
                      79*******************9999***99999************************************************************* PP

           DUF573  94 kiWgs 98 
                      kiW++
  Thhalv10005455m 230 KIWNQ 234
                      ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-34137233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MTSADHRDAV FSVESPELEE DGSAGGGGGG GGGGETDSDE DLRENEDVVM PEEPNEADDD  60
DPEYEDLNSP SMVSAVSTAP LVSAAEKSSS TGTVTVALPA GSAVPVAAIP VDSDPKWHRM  120
TEIVHQRPPI DDSRRLFQRL WTDEDEIELL RGFLDYITSH RGSSSHPPDT APFYEQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVMSKISS GKEVFFKSPH DQATFDISRK IWNQTGKIIG  240
FEDNTVMDFE ETNNHHHVNN NNTNGSSGFN IPIANVDFDS ENGLEKKVTM SSSGGSRKRS  300
RSRIGKIDED KPINPCDGPA PNAATNVNLN ENVAAIGEFG EGRNLGGLIE ETVRNCVSPL  360
IKEMMNGTTG MMMAAVGGFP GGGGHALGVL SPTLMPSLNL GFGGGGGGKG VADERWRRQQ  420
ILELEVYSRR LDLVQEQIRA TVNELKTMPN GG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005455m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395005.10.0probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLV4MLG90.0V4MLG9_EUTSA; Uncharacterized protein
STRINGXP_006395005.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]