PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10004772m | ||||||||
Common Name | EUTSA_v10004772mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 30826.1 Da PI: 10.0377 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4.1e-14 | 90 | 139 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r++h ++Er+RR+++N+ ++ L++++P++ +s++ + a+i e +++Y+k+ Thhalv10004772m 90 QRMNHIAVERNRRRQMNHFLSILKSMMPPS---YSQRSDQASIIEGTINYLKK 139 79****************************...******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-16 | 88 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.046 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-11 | 90 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-12 | 90 | 145 | No hit | No description |
SMART | SM00353 | 1.2E-9 | 95 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
METSLTYEIF DHYQNVVVSG SDDVTFQKNP FSCSTSYATP LISRSIAEKR SHWTEYLSYL 60 RARGGSGEEP PRKRRRRARN EKKIEEKEKQ RMNHIAVERN RRRQMNHFLS ILKSMMPPSY 120 SQRSDQASII EGTINYLKKQ ERLLQSLEAQ LKATDPNQTP NIFSDFFIFL QFSTATASAD 180 VEVTMVERHA NIKVFTKTRP KLIFNIIKKF HSLGLSTLHL NLTTSKDMSL FTFSVKVEED 240 CQLTATGSEV ASAVHEVVRR IHKENCI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 75 | RKRRR |
2 | 71 | 78 | RKRRRRAR |
3 | 90 | 101 | RMNHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10004772m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY070095 | 7e-87 | AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds. | |||
GenBank | AY096704 | 7e-87 | AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394047.1 | 0.0 | transcription factor bHLH99 | ||||
Swissprot | Q9FKQ6 | 1e-110 | BH099_ARATH; Transcription factor bHLH99 | ||||
TrEMBL | V4KVD2 | 0.0 | V4KVD2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394047.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14959 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65320.1 | 1e-108 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10004772m |
Entrez Gene | 18012560 |
Publications ? help Back to Top | |||
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