PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004501m
Common NameEUTSA_v10004501mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 351aa    MW: 39371.1 Da    PI: 4.6076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004501mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.57.9e-4761341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtd elv +yLk+kv gkk+ + ++i+e+diyk+eP dLp k ++++++ +wyfF++r+kky+++ +++r+t+sgyWk+tgkd++v
  Thhalv10004501m   6 LAPGFRFHPTDVELVRYYLKRKVLGKKFLT-NAIAEIDIYKFEPPDLPdKsCIRTGDLKWYFFCPREKKYPKSAKAKRSTESGYWKTTGKDRDV 98 
                      579************************888.88**************96358888999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++e+vg  +tL+f+ g++p+g +tdWvmheyrle
  Thhalv10004501m  99 SY-NNEVVGKIRTLIFHYGKTPRGDRTDWVMHEYRLE 134
                      *9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-553156IPR003441NAC domain
PROSITE profilePS5100552.7796156IPR003441NAC domain
PfamPF023651.3E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGKTNLAPGF RFHPTDVELV RYYLKRKVLG KKFLTNAIAE IDIYKFEPPD LPDKSCIRTG  60
DLKWYFFCPR EKKYPKSAKA KRSTESGYWK TTGKDRDVSY NNEVVGKIRT LIFHYGKTPR  120
GDRTDWVMHE YRLEDKVLAQ KNVPQDTYVL CVLFKKNGLG PRHGSQYGAP FKEEDWSDEE  180
EEEETENLVA AIPSAENADP GPGRETSLVA TASHSHSSKN CFAGVISESC VSDVPQLTAT  240
VLPPPTSDVV AYNPMSSSPL LEVPQAPPDD DELYSLLDLF VVDNDESLLL DGFNNQYEVR  300
HEPEVPVVEE APVCLGDAEL SRIPDLSDEL FIEIQDLTEP SNLSAQRPTH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43115712166NO APICAL MERISTEM PROTEIN
1ut4_B2e-43115712166NO APICAL MERISTEM PROTEIN
1ut7_A2e-43115712166NO APICAL MERISTEM PROTEIN
1ut7_B2e-43115712166NO APICAL MERISTEM PROTEIN
4dul_A2e-43115712166NAC domain-containing protein 19
4dul_B2e-43115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004501m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0118221e-168BT011822.1 Arabidopsis thaliana At5g49950 mRNA sequence.
GenBankBT0155831e-168BT015583.1 Arabidopsis thaliana At5g64060 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394207.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-139NAC82_ARATH; NAC domain-containing protein 82
TrEMBLV4KVV10.0V4KVV1_EUTSA; Uncharacterized protein
STRINGXP_006394207.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-163NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]