PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002011m
Common NameEUTSA_v10002011mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 387aa    MW: 43539.2 Da    PI: 4.8253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002011mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  Thhalv10002011m 22 KGPWTSAEDQLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding45.81.4e-1475118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+++ +++++ +G++ W++ a++++ gRt++++k++w++
  Thhalv10002011m  75 KGAFTEKEEQRVIELHASMGNK-WARMAAELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7521769IPR017930Myb domain
SuperFamilySSF466894.77E-2919116IPR009057Homeodomain-like
SMARTSM007175.7E-152171IPR001005SANT/Myb domain
PfamPF002493.3E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-242376IPR009057Homeodomain-like
CDDcd001676.21E-122469No hitNo description
PROSITE profilePS5129424.52970124IPR017930Myb domain
SMARTSM007171.7E-1474122IPR001005SANT/Myb domain
PfamPF002491.1E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2477122IPR009057Homeodomain-like
CDDcd001672.41E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MRNVRHDSGS GEDFAIEKNF HKGPWTSAED QLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEQRVIELH ASMGNKWARM AAELPGRTDN EIKNFWNTRL  120
KRLQRLGLPI YPDEVREQAM NTAAHNGQNT DSLDAHHSQE SLEPDSLEIP EVDFKYLQLN  180
NCSSYYQSML RNVPTGNLMR QRPCFFQPNM YNLTGSMYMP NRKRFREPET AIPFVGCYAT  240
NEQSGQLWNY PLGDSNPEQF SVLPDSHLLG NATYSSPSGP LIHEAEKLEL PSFQCFEPQE  300
EPGDWITQET NPMPELDSDN ALVQSPLTDQ TPSDCPSSFC DGLLESVVYG SPGERQATNT  360
DSDSPLIQSS LLDHTEFTPA TANTIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30221227106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002011m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408602.20.0transcription factor MYB104
SwissprotQ9SM271e-119MY104_ARATH; Transcription factor MYB104
TrEMBLV4LHS40.0V4LHS4_EUTSA; Uncharacterized protein
STRINGXP_006408602.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.10.0myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]