PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001533m
Common NameEUTSA_v10001533mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 342aa    MW: 36815.7 Da    PI: 9.7559
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001533mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.71.2e-23215276162
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+  
  Thhalv10001533m 215 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGA 276
                      89*******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.9E-11152IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.2E-1487194No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-17209275No hitNo description
PfamPF001706.1E-22215277IPR004827Basic-leucine zipper domain
SMARTSM003381.2E-21215279IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403217280IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11218274No hitNo description
CDDcd147021.72E-21220271No hitNo description
PROSITE patternPS000360222237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MPPYYNSAMA ASGHPPPPPP YMWNPQHMMS PYGTHYATVY PHGGGVYAHP GIHMGSQPQG  60
QKGQPLTSPG THMSIDDTPT KSTGNTDNGL MKKLKEFDGL AMSLGNGNAE NNADGHKRSH  120
NSSEMEGSTD ASDGNTTGAD EPKLKRSREG TPTKDGKHLV QSCSFRSVSP SSGDNGVQPV  180
QGAGAIVSPG VSANSNPLMS QSLAMVPPET WLQNERELKR ERRKQSNRES ARRSRLRKQA  240
ETEELARKVE ALTAENMALR SELNQLNEKS DKLRGANATL LDKLKSSEPE NRVTENMLSR  300
VKNSGTGDKN KNQGDNDSNS NNKLHQLLDT KPRRGGAVAA G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237RRSRLRK
2231238RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001533m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397815.20.0G-box-binding factor 3 isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLV4LHK70.0V4LHK7_EUTSA; Uncharacterized protein
STRINGXP_006397815.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.10.0G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]