PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000288m | ||||||||
Common Name | EUTSA_v10000288mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 270aa MW: 29714.2 Da PI: 7.9406 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.8 | 1.2e-29 | 143 | 202 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK k+++ pr+Y+rC+++ +Cpvkkkv+rsaedp++++ tY g+Hnh+ Thhalv10000288m 143 VKDGYQWRKYGQKITKDNPSPRAYFRCSFSpSCPVKKKVQRSAEDPSFLVATYVGTHNHP 202 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.498 | 138 | 204 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-28 | 138 | 204 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-26 | 141 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-33 | 143 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 144 | 202 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MDYSSSLDPN TNPFDLHFSG KLPKREGSDS SSVDLVKDEA NTLQEELNRA NSENKKLTEM 60 LARVCKNYYA LQNYLEELQS RKSPENDKFQ TEQLTRKRKQ DIGELVSSSV GLGCGTSEII 120 SGDNSTVSTS YYPADKSDSS LTVKDGYQWR KYGQKITKDN PSPRAYFRCS FSPSCPVKKK 180 VQRSAEDPSF LVATYVGTHN HPGPHIGGSR TVELDLVQGG LGPVEEKKEK GSVREVLMQQ 240 MAASLTSDPK FTAALAVAIS GRLIDQSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 143 | 204 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 99 | TRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00068 | PBM | Transfer from AT2G25000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000288m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014155.1 | 0.0 | probable WRKY transcription factor 60 | ||||
Swissprot | Q9SK33 | 1e-146 | WRK60_ARATH; Probable WRKY transcription factor 60 | ||||
TrEMBL | V4NJP2 | 0.0 | V4NJP2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405073.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 1e-149 | WRKY DNA-binding protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000288m |
Entrez Gene | 18021857 |