PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG044087t1

Common Name

TCM_044087

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 565aa MW: 64658.9 Da PI: 6.4649

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG044087t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.8e-30	119	204	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Thecc1EG044087t1 119 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 204 8***********************************999*************************97..66678*****85 PP
2	trihelix	66.8	4.4e-21	417	502	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt++ev Li++r++ e+r+++ g +k+ lWee+ +km g+er +++Ckekw+n+++++ ++e kkr +e+ ++ yf+ l+ Thecc1EG044087t1 417 RWTEHEVSSLIQLRKSFESRFQDaGYSKESLWEEIEAKMVGLGYERDAVECKEKWDNMQMYFNMTTECYKKR-KEDFRSSNYFQLLD 502 8*******************7478*******************************************8.56666889999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.76	112	177	IPR017877	Myb-like domain
SMART	SM00717	1.2	116	179	IPR001005	SANT/Myb domain
Pfam	PF13837	8.5E-21	118	205	No hit	No description
CDD	cd12203	1.54E-20	118	184	No hit	No description
PROSITE profile	PS50090	7.538	410	475	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.6E-5	411	474	IPR009057	Homeodomain-like
SMART	SM00717	0.039	414	477	IPR001005	SANT/Myb domain
Pfam	PF13837	2.0E-16	416	503	No hit	No description
CDD	cd12203	6.37E-21	416	482	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MEMGDQYGLP DLRQFLARGT HFPDTPQPSE PCFTHTHRNM APLAPYHEAF MVSNGMAVPS 60 SLIRFGHDHF AGASATTTAI AASASSAAAS GPCAALFGVE MESSGIGWSL GNIEGGNSRW 120 PRQETLTLLD IRSRLDSKFK EANQKGPLWD EVSRIMAEEH GYQRSGKKCR EKFENLYKYY 180 KKTKEGKAGR QDGKNYRFFR QLEALYGETS NQSSLLETNL AQRTLLCQTP NNTMNQENQE 240 FLQEQKLSES LTFSNASEFE TSSSENNDDD LSAIAFMMKQ SMVEKQKSIN ESGSSSRVKK 300 GWKTKVKDFV ESQMKKLIDS QDMWMERMLK AIDDKERERV SKEEEWRRQE AARFDKEHEF 360 WAKERSWVEA RDAALLDVLK KFTAGKGLEV SSSAEAPVIT ETHSHNKNQQ DAINTNRWTE 420 HEVSSLIQLR KSFESRFQDA GYSKESLWEE IEAKMVGLGY ERDAVECKEK WDNMQMYFNM 480 TTECYKKRKE DFRSSNYFQL LDSCDGQENN TNTVKQRDSP SNSYVGTHQQ LQDTNSFQIA 540 VHQGDQRLWD RYGLKLGKGK NQQI*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MEMGDQYGLP DLRQFLARGT HFPDTPQPSE PCFTHTHRNM APLAPYHEAF MVSNGMAVPS  60
SLIRFGHDHF AGASATTTAI AASASSAAAS GPCAALFGVE MESSGIGWSL GNIEGGNSRW  120
PRQETLTLLD IRSRLDSKFK EANQKGPLWD EVSRIMAEEH GYQRSGKKCR EKFENLYKYY  180
KKTKEGKAGR QDGKNYRFFR QLEALYGETS NQSSLLETNL AQRTLLCQTP NNTMNQENQE  240
FLQEQKLSES LTFSNASEFE TSSSENNDDD LSAIAFMMKQ SMVEKQKSIN ESGSSSRVKK  300
GWKTKVKDFV ESQMKKLIDS QDMWMERMLK AIDDKERERV SKEEEWRRQE AARFDKEHEF  360
WAKERSWVEA RDAALLDVLK KFTAGKGLEV SSSAEAPVIT ETHSHNKNQQ DAINTNRWTE  420
HEVSSLIQLR KSFESRFQDA GYSKESLWEE IEAKMVGLGY ERDAVECKEK WDNMQMYFNM  480
TTECYKKRKE DFRSSNYFQL LDSCDGQENN TNTVKQRDSP SNSYVGTHQQ LQDTNSFQIA  540
VHQGDQRLWD RYGLKLGKGK NQQI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017984194.1	0.0	PREDICTED: trihelix transcription factor PTL
TrEMBL	A0A061FPI8	0.0	A0A061FPI8_THECC; Transcription factor, putative
STRING	EOY19190	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-112	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG044087t1
Entrez Gene	18586768

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]