PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043306t1
Common NameTCM_043306
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 386aa    MW: 41999 Da    PI: 4.2827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043306t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1867118156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       + y+GVr++  +g+WvAeIr p  ng  kr++lg+f ta eAa a+++a++ ++ge
  Thecc1EG043306t1  67 CNYRGVRQRT-WGKWVAEIRAP--NG-GKRIWLGTFPTACEAALAYDEAARTMYGE 118
                       56*****999.**********9..33.5************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1367118IPR001471AP2/ERF domain
CDDcd000189.53E-3067126No hitNo description
SuperFamilySSF541714.97E-2068125IPR016177DNA-binding domain
SMARTSM003802.4E-3368131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-2968126IPR001471AP2/ERF domain
PROSITE profilePS5103221.29868125IPR001471AP2/ERF domain
PRINTSPR003671.6E-96980IPR001471AP2/ERF domain
PRINTSPR003671.6E-991107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDQNLKVAST LSSDSCRKRK RRDGLSVADT LKLWSQGKDA KQSCKAPAKG SKKGCMKGKG  60
GPQNQRCNYR GVRQRTWGKW VAEIRAPNGG KRIWLGTFPT ACEAALAYDE AARTMYGENA  120
IINMPHISRF DSVATTSHAF SEASTCSASN SMTVPSNYEI CGRDVDGEGE PSRMNVEYTV  180
DSETAWTMHG ENATLNMPHV SDFDSVSITS PVFSEATTCS ASNSMTVPIN YEICGRDVDG  240
EGEPSGMNVE YTVDSETAWT MDGENATLNM PHVADFDSVT ITSPVFSEAT TCAPSNSVTV  300
SSNSEICERD VDGEGEPSKM NIEYTADSEA ATTSQDVKTD AKSEDHTDDS WLTNGLDFAK  360
NIAIDFGETA DWFEDYYFDV PEFFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1768125260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984289.10.0PREDICTED: uncharacterized protein LOC108663595
TrEMBLA0A061FQ590.0A0A061FQ59_THECC; Dehydration-responsive element-binding protein 2C
STRINGEOY188170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-24DRE-binding protein 2A
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]