PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037914t1

Common Name

TCM_037914

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 350aa MW: 41346.3 Da PI: 4.3529

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037914t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.8	5.6e-13	104	188	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +L+e+ ++ +l+r++l++ +W +v++k+ + + e++ qC+ ++ l++++kk+k +++ +ss++++f+++e Thecc1EG037914t1 104 WTQQEIYVLLEVWGDRFLQLGRRSLRGEDWVDVAEKVsDALKSEKNEGQCRRMIDGLKRKFKKEKLKAESM-GLNSSKWVFFRKME 188 ***********************************778999*******************99996.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-15	103	189	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDDIDDDSRC PTKPYFFNRL KHPQYPRSIR TRHVYNYRPE EEDGEEENDD VEDDNDNDPD 60 VYYRRFKESE RFERYPKRQK LRTSAPSYQF AADHRDSFTN TYDWTQQEIY VLLEVWGDRF 120 LQLGRRSLRG EDWVDVAEKV SDALKSEKNE GQCRRMIDGL KRKFKKEKLK AESMGLNSSK 180 WVFFRKMEML MGLGSSFRQP ESGLACGVDS GEFVFMNTQV YLDRSNGFDE MRDSPAESEM 240 VEDDEEEEDG GSRMRMEGND EHSMRMLADS VQRFGKIYEK IESSKGEHMK ELEKMRMDFQ 300 KELEVQKKQI LERAQAEIAK IKEEDDADDE EESDDDDEDN DNSTENISE*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDDIDDDSRC PTKPYFFNRL KHPQYPRSIR TRHVYNYRPE EEDGEEENDD VEDDNDNDPD  60
VYYRRFKESE RFERYPKRQK LRTSAPSYQF AADHRDSFTN TYDWTQQEIY VLLEVWGDRF  120
LQLGRRSLRG EDWVDVAEKV SDALKSEKNE GQCRRMIDGL KRKFKKEKLK AESMGLNSSK  180
WVFFRKMEML MGLGSSFRQP ESGLACGVDS GEFVFMNTQV YLDRSNGFDE MRDSPAESEM  240
VEDDEEEEDG GSRMRMEGND EHSMRMLADS VQRFGKIYEK IESSKGEHMK ELEKMRMDFQ  300
KELEVQKKQI LERAQAEIAK IKEEDDADDE EESDDDDEDN DNSTENISE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964552	4e-61	JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007013223.2	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A061GMS8	0.0	A0A061GMS8_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative isoform 1
STRING	EOY30841	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-90	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG037914t1
Entrez Gene	18588629

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]