PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037550t2 | ||||||||
Common Name | TCM_037550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GRF | ||||||||
Protein Properties | Length: 381aa MW: 43261.1 Da PI: 8.5494 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.5e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Thecc1EG037550t2 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120 79***************************************998 PP | |||||||
2 | QLQ | 58.4 | 2.1e-20 | 9 | 43 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ i+ Thecc1EG037550t2 9 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFTIK 43 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.8E-12 | 8 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.472 | 9 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-15 | 9 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MMSGRNRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF TIKRSCLDSS LSSRLFSRQP 60 QHIGWNCFQM GLGRKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE 120 VTTATIANPS TATPNISSIT KTHPSSFSSL SSMSLSSSES QQHHHQLRYP GYHSQVNHPF 180 LYPHASRPPG IGLSPQENTT HPLLDSGTYS QTNTDYRRNS YVYGLKEEVD EHAFFSEPSG 240 TMRSFSGPSV DDSWQLTPLT MSSSFSKQRS CSGLQSEYSY LQLQSLTDHT SKQNKQDDEH 300 CYILGSDIKC EMPIKLEKGE PQKTVHRFFD EWPPKHRDSW LDLDDKSSNS SSVSTTRLSI 360 SIPSTSHDFP IFNSRAHNDA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 1e-52 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012668.2 | 0.0 | PREDICTED: growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A061GMB8 | 0.0 | A0A061GMB8_THECC; Growth-regulating factor 5 isoform 2 | ||||
STRING | EOY30287 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-50 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037550t2 |
Entrez Gene | 18588300 |
Publications ? help Back to Top | |||
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