PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG031955t1

Common Name

TCM_031955

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BES1

Protein Properties

Length: 326aa MW: 34902.9 Da PI: 8.2895

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031955t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	213.8	4.3e-66	2	145	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 ++++r ptwkErEnnkrRERrRRaiaaki++GLR+ Gnyklpk++DnneVlkALc+eAGw+ve DGttyrkg+kp e+++++g sa++sp+ss Thecc1EG031955t1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFSGLRMFGNYKLPKHCDNNEVLKALCNEAGWTVESDGTTYRKGCKPVERMDIVGGSATMSPCSS 94 5899*************************************************************************************** PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 ++ +sp++sy++sp sssfpsp+s++ + + + +sl+p+l++ls++sss+ Thecc1EG031955t1 95 YH--------PSPCASYNPSPVSSSFPSPASSSYVVNPNGdgNSLIPWLKNLSSASSSA 145 ........*****************9999887765577********9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.0E-66	3	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FSGLRMFGNY KLPKHCDNNE VLKALCNEAG 60 WTVESDGTTY RKGCKPVERM DIVGGSATMS PCSSYHPSPC ASYNPSPVSS SFPSPASSSY 120 VVNPNGDGNS LIPWLKNLSS ASSSASSSKL PHLYIHGGSI SAPVTPPLSS PTARTPRIKT 180 DWEEQSARPG WSAQQHSLLP SSTPPSPGRQ IVPDPEWFAG LRIPHSGPTS PTFSLVSTNP 240 FGFKEEVLAG GGSRMWTPGQ SGTCSPAIAA GSDHTADVPM SEVISDEFAF GSNATGLVKP 300 WEGERIHEEC GSDDLELTLG SSRTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243116	0.0	AC243116.1 Gossypium raimondii clone GR__Ba0066P11-hvl, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017980661.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4
Swissprot	Q9ZV88	1e-144	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A061F8K9	0.0	A0A061F8K9_THECC; BES1/BZR1
STRING	EOY13391	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-125	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Thecc1EG031955t1
Entrez Gene	18594295

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]