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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thecc1EG029796t1 |
| Common Name | TCM_029796 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
NAC |
| Protein Properties |
Length: 321aa MW: 36046.8 Da PI: 8.4157 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG029796t1 | genome | CGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161.2 | 4e-50 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeel+ +yLk+k++ ++++ +i++v+iyk++Pw+Lp k+ +e+ew+fFs+rdkky++g+r+nra++sgyWkatg+dk+++
Thecc1EG029796t1 16 LPPGFRFHPTDEELIIHYLKQKASPSSNPPILIIADVNIYKFNPWELPDKAFFGENEWFFFSPRDKKYPNGTRPNRAAASGYWKATGTDKPII 108
79**********************999777678***************7777899************************************** PP
NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
s+ +++ g+kk Lvfykg+ pkg+ktdW+m ey l
Thecc1EG029796t1 109 SSvGSQCLGMKKALVFYKGHPPKGVKTDWMMTEYML 144
9978888***************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MFSTLQKQIA RPSASLPPGF RFHPTDEELI IHYLKQKASP SSNPPILIIA DVNIYKFNPW 60
ELPDKAFFGE NEWFFFSPRD KKYPNGTRPN RAAASGYWKA TGTDKPIISS VGSQCLGMKK 120
ALVFYKGHPP KGVKTDWMMT EYMLLDDYFS SQRPKGSMRL DDWVLCRVRQ KSKVPQQLGG 180
RNYSGSSCSP PFSRGYLQGQ EMTIENANIL HGHHQLPAQY QMSPLESEEL DEKGQIMDLQ 240
EGSPEYSLSN SPKTIDSNVR NVLKSIEREL SVGALDELLP SQPDKRLKVS ASDNSPANAS 300
VFQISFPAPS ASYQQHFSEF *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-64 | 15 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-64 | 15 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-64 | 15 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-64 | 15 | 177 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-64 | 15 | 177 | 19 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-64 | 15 | 177 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-64 | 15 | 177 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
