PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026958t1
Common NameTCM_026958
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 313aa    MW: 35789.3 Da    PI: 8.3775
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026958t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.22.9e-094297152
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....teker 52
                      +fY++YA  +G  v k + +++ +ng  ++++f Cskeg+r+e+ +k     +e +r
  Thecc1EG026958t1 42 EFYKAYACAMGLGVHKGSCRRN-KNGIEVMKHFACSKEGHRAEKWEKlenwvREPKR 97
                      6********************9.566677899***********98886555533333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-64292IPR004330FAR1 DNA binding domain
PfamPF105518.8E-32207301IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLTSCRLMES QENNLSDAKY LHELSKDEIL GLEFDDLEDV YEFYKAYACA MGLGVHKGSC  60
RRNKNGIEVM KHFACSKEGH RAEKWEKLEN WVREPKRHIK VVDVYEAKAM KVAGIKTCQV  120
MNVFAAQVGG IQNVGFTRKD FYNRMAAKRH AKVNDGDVQA TLLYFGVKKE IDNGFYMKHT  180
TYDDNKLKNL FWADSISRLD YACFGDVLAY DTTYKKNTFN LPLLVFIGVN HHHMTTIFAL  240
ALLTNEDAES YIWALTTFLE CMMNKKPISV VIDGDRAMRK ALEMVFPGVR HRLCSWHLAR  300
NAQANVPLPG FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1277673e-49JN127767.1 Theobroma cacao clone TCC_BB056D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972576.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A061G6T40.0A0A061G6T4_THECC; FAR1-related sequence 5-like protein
STRINGEOY255750.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-41FAR1-related sequence 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]