PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG026958t1 | ||||||||
Common Name | TCM_026958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 313aa MW: 35789.3 Da PI: 8.3775 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.2 | 2.9e-09 | 42 | 97 | 1 | 52 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....teker 52 +fY++YA +G v k + +++ +ng ++++f Cskeg+r+e+ +k +e +r Thecc1EG026958t1 42 EFYKAYACAMGLGVHKGSCRRN-KNGIEVMKHFACSKEGHRAEKWEKlenwvREPKR 97 6********************9.566677899***********98886555533333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-6 | 42 | 92 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.8E-32 | 207 | 301 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MLTSCRLMES QENNLSDAKY LHELSKDEIL GLEFDDLEDV YEFYKAYACA MGLGVHKGSC 60 RRNKNGIEVM KHFACSKEGH RAEKWEKLEN WVREPKRHIK VVDVYEAKAM KVAGIKTCQV 120 MNVFAAQVGG IQNVGFTRKD FYNRMAAKRH AKVNDGDVQA TLLYFGVKKE IDNGFYMKHT 180 TYDDNKLKNL FWADSISRLD YACFGDVLAY DTTYKKNTFN LPLLVFIGVN HHHMTTIFAL 240 ALLTNEDAES YIWALTTFLE CMMNKKPISV VIDGDRAMRK ALEMVFPGVR HRLCSWHLAR 300 NAQANVPLPG FV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN127767 | 3e-49 | JN127767.1 Theobroma cacao clone TCC_BB056D20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972576.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A061G6T4 | 0.0 | A0A061G6T4_THECC; FAR1-related sequence 5-like protein | ||||
STRING | EOY25575 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-41 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG026958t1 |
Entrez Gene | 18595089 |
Publications ? help Back to Top | |||
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