PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025807t1 | ||||||||
Common Name | TCM_025807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 488aa MW: 52925.2 Da PI: 6.6527 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.1e-39 | 94 | 153 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Thecc1EG025807t1 94 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 153 78999*****************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-30 | 82 | 151 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.1E-32 | 95 | 152 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 98 | 152 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 100 | 136 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MNGGDPAFKL FGRKIAVPEP QIHAGDTSSE ITNPETETSY TNTSGDPDKS ITVENDKEEH 60 QTSMKSNEIQ TNSKLKEEQS ETDSADQEKV FKKPDKVLPC PRCNSLDTKF CYFNNYNVNQ 120 PRHFCKNCQR YWTAGGTMRN VPIGAGRRKN KHLASQYRQI IVSSDGVPMT RIETPDSANQ 180 QLLPPGESTT AFRPSMGNGT VLKFGAEAPL CESMETVLSL GDQKRSVEMG TVSCGEIREE 240 PSSCGSSATP CSIPGNHLPG NVMQKERVGL AGPNEQITQH PPQCYPIPPW IFPWNPGMNN 300 VAPMAVGQSS SERIGALNSS TSNAVQWCPT PMMAVPGFCP PNVPLQFVPA YWGCMPLWAA 360 SGGNVSFSGS NGCLSPSSST SNSCCSGNGS PRLGKHSRET NFVEEQSEKC VLVPKTLRID 420 DPNEASRSPI WATLGIKPDQ KDPLRRGKIF NAFDSKAEGK DHLLDGSHIL EANPAALSRS 480 HTFQEST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007029942.2 | 0.0 | PREDICTED: cyclic dof factor 2 isoform X1 | ||||
TrEMBL | A0A061F7F7 | 0.0 | A0A061F7F7_THECC; Cycling DOF factor 2, putative isoform 1 | ||||
STRING | EOY10444 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15591 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-71 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025807t1 |
Entrez Gene | 18599777 |
Publications ? help Back to Top | |||
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