PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025482t1 | ||||||||
Common Name | TCM_025482 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | HSF | ||||||||
Protein Properties | Length: 501aa MW: 55336.5 Da PI: 5.0392 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.5 | 3.4e-36 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y+++ed+++++++sws+ +nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll Thecc1EG025482t1 25 FLSKTYDMVEDPSTNSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 108 9****************************************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i r+k Thecc1EG025482t1 109 KTISRRKP 116 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.0E-39 | 15 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.48E-35 | 20 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-60 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-31 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MDSLHDSISA ANAAAATNGN TVPPFLSKTY DMVEDPSTNS VVSWSSGNNS FVVWKVPEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLKT ISRRKPANVH 120 NNQQPQVQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQT TDNQLQTVGQ 180 RVQLMEQRQQ QMMSFLAKAM QSPGFLSQLV QQQNESNRRL TGGNKKRRLP RQDEENLTGE 240 HGAISPNGQI VKFQPSLNEA AKAMLHQILK MNTSSRLESS MNSPGAFMID GVPPSNAVDS 300 GSSSSRISGV TLSEVPPASG QSYLQAESGF PDTCPSTATH LTTEHTKVDQ ISEINKSQKD 360 AAFPNFPQMQ GIVPGNTVEF TDASLAGSER GNTEYVDQMS AGLNGGMPVE TDDFSTDHDM 420 DILLEGTPKL PAINDVFWEQ FLTTSPLTED TDEITSSSLE NGANIEQESL LVQENGWDKI 480 PHMNHLTEQI GLLTSDSRRG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-26 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-26 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-26 | 15 | 114 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007029602.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e | ||||
Swissprot | Q84T61 | 1e-170 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A061F6G9 | 0.0 | A0A061F6G9_THECC; Heat shock factor protein HSF8, putative | ||||
STRING | EOY10104 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-125 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025482t1 |
Entrez Gene | 18599528 |
Publications ? help Back to Top | |||
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