PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022457t1
Common NameTCM_022457
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 575aa    MW: 65503.6 Da    PI: 6.8244
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022457t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.2e-30127212187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Thecc1EG022457t1 127 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 212
                       8*************************************999*****************************98..55667*******85 PP
2trihelix68.41.4e-21422503283
          trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                       W+++e+  Li++r++me+r+ + +++++ lWee+++km+  gf rs+ +Ckekw++++ +  k+ke++kkr +e+s+ c y++
  Thecc1EG022457t1 422 WQESEISRLIQLRTSMESRFHQgACSEEILWEEIAAKMACLGFDRSALMCKEKWNSISAYLMKTKESNKKR-KENSRGCGYYQ 503
                       *********************9458*********************************************8.788889*9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.085124187IPR001005SANT/Myb domain
PROSITE profilePS500906.98126185IPR017877Myb-like domain
PfamPF138373.1E-20127213No hitNo description
CDDcd122032.22E-19127192No hitNo description
Gene3DG3DSA:1.10.10.604.1E-5413478IPR009057Homeodomain-like
PROSITE profilePS500906.98414479IPR017877Myb-like domain
SMARTSM007170.11418481IPR001005SANT/Myb domain
PfamPF138372.5E-14421507No hitNo description
CDDcd122031.39E-21422486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEMEDHHHHQ YAMADLRQLM NGRPTHFQGI PQAPELFSSG HRNLPPPQPH HHQHHPHTFE  60
MMQMVGRQVG HELMPRGLHH DFPADSTANN ATPTAAAVAV TSASTPSASC GFDGEATAFG  120
GDGGTGRWPR QETLTLLEIR SRLDPKFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK  180
FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNS VSGPETQLIG NNFRFHGTPN  240
SNTQANQDVY HSQKLCDSLS LSNSSDFDTS SSDDNDLSTA GPMENDSSEK RKKKRGSRSW  300
KAKIKEFIDS QMRKLMERQE AWLEKLTKTL EQKEQERVLR EEEWRKEEAA RIDREHKFWA  360
KERAWIEARD AALMEALQNL TGKQLKVTSP EELMATEMQN HSENQNENGS ETINNTVKAD  420
GWQESEISRL IQLRTSMESR FHQGACSEEI LWEEIAAKMA CLGFDRSALM CKEKWNSISA  480
YLMKTKESNK KRKENSRGCG YYQNNEALYS QGRAYCEINE QGSETVRLQA NDGSSPSNSN  540
VGNAVNDSCF RFLMADGENL WENYGLKLSK GENQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027628.10.0PREDICTED: trihelix transcription factor PTL
SwissprotQ9LZS01e-166PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A061ESW50.0A0A061ESW5_THECC; Duplicated homeodomain-like superfamily protein, putative
STRINGEOY081300.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-135Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]