PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021602t1

Common Name

TCM_021602

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BES1

Protein Properties

Length: 169aa MW: 18606 Da PI: 9.8977

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021602t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	127.9	1.2e-39	35	125	4	92
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 r pt+ Er +nk+RERrRRa+a i+aGL+++Gnyklpk+aD n+ lkALc+eAGw ve+DGt yrk + ++ g+ +++ ++ Thecc1EG021602t1 35 YRFPTENERQKNKQRERRRRAVAQNIFAGLKEHGNYKLPKHADANDLLKALCQEAGWHVEEDGTIYRKKTVSStmAASVENGEAKDQDYCT 125 589****************************************************************877665344444444444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.4E-36	35	125	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAGEKKTTLR GCIKKSKGPW IVHRATKDGG IVTRYRFPTE NERQKNKQRE RRRRAVAQNI 60 FAGLKEHGNY KLPKHADAND LLKALCQEAG WHVEEDGTIY RKKTVSSTMA ASVENGEAKD 120 QDYCTCNDHG NVLPASGTFL SVGQSQECSG INLVLSLSVS NSLTRNVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-14	55	102	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-14	55	102	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-14	55	102	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-14	55	102	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976358.1	1e-124	PREDICTED: protein BZR1 homolog 3
TrEMBL	A0A061ERT9	1e-123	A0A061ERT9_THECC; Brassinosteroid signaling positive regulator family protein
STRING	EOY07087	1e-124	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19597	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50750.1	1e-18	BES1/BZR1 homolog 1

Link Out ? help Back to Top
Phytozome	Thecc1EG021602t1
Entrez Gene	18597461

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]