PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018476t1
Common NameTCM_018476
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 92aa    MW: 10357.8 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018476t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247.2e-0822581854
                      HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      +  ++Lr+llP+ +   +s K+s + +L+++++YI+sL
  Thecc1EG018476t1 22 ELVSKLRQLLPEiR-DRRSDKVSASKVLQETCNYIRSL 58
                      56689*******76.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.512458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-81974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-92077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-52258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSA SVSRISDDQI IELVSKLRQL LPEIRDRRSD KVSASKVLQE TCNYIRSLHR  60
EVDDLSERLS QLLATIDSDS AEAAIIRSLI M*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032495.14e-55PREDICTED: transcription factor PRE5
RefseqXP_021297636.14e-55transcription factor PRE5-like
SwissprotQ9LJX11e-43PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A061EEQ99e-54A0A061EEQ9_THECC; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRINGEOY034212e-54(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-37bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]