PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018386t1
Common NameTCM_018386
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 388aa    MW: 43916.8 Da    PI: 6.7968
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018386t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-1569128155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Thecc1EG018386t1  69 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDDEEAAARAYDLAALKYWG 128
                       789******************888855555447*************************98 PP
2AP252.41.3e-16171222155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Thecc1EG018386t1 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222
                       89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1769138IPR016177DNA-binding domain
PfamPF008479.4E-1269128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1570137IPR001471AP2/ERF domain
SMARTSM003801.3E-2470142IPR001471AP2/ERF domain
PROSITE profilePS5103219.74470136IPR001471AP2/ERF domain
PRINTSPR003672.8E-57182IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-18171232IPR016177DNA-binding domain
PfamPF008474.8E-12171222IPR001471AP2/ERF domain
CDDcd000181.20E-24171232No hitNo description
PROSITE profilePS5103218.953172230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18172231IPR001471AP2/ERF domain
SMARTSM003802.7E-26172236IPR001471AP2/ERF domain
PRINTSPR003672.8E-5212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEMILVKDEQ IQGRRRMCSA DGEIQTIRCV KRRRRDPASV ALGCYDNQGQ QPQQQNDQTN  60
AATTVKRSSR FRGVSRHRWT GRYEAHLWDK LSWNVTQKKK GKQVYLGAYD DEEAAARAYD  120
LAALKYWGTS TFTNFPISDY EKEIEIMQTV AKEEYLASLR RKSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSTYIRWLKP  240
GTNNPVAADE SLGMTEPESV PLASSYSPRE ESKPSFYHSF ATEYLNSPQK QEVVEGKIPV  300
NSYNKTSSPT ALGLLLRSSI FRELVEKNAN VSEDESTDAD DEPKNQQAGS DDEFGGLFYD  360
GIGDFQFICS SGKDSIELQE REVPFVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRMCSADGEIQTIRCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032458.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A061EM400.0A0A061EM40_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY033840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-80AP2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]