PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG015674t1 | ||||||||
Common Name | TCM_015674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27657.4 Da PI: 5.4075 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.8 | 1.9e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+++nrqvtfsk r+g+lKKA+E+SvLCdae+ +iifsstg+l++y++ Thecc1EG015674t1 9 KLIEDTTNRQVTFSKFRAGLLKKAHEVSVLCDAEIGLIIFSSTGELFDYCT 59 569**********************************************96 PP | |||||||
2 | K-box | 55 | 3.5e-19 | 79 | 169 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ +++ lq+ ++kL++e + L+ ++ hl G +L+sL++++L++LeqqLe s++k+R++K++ll+ q+++l + ++++ en++L + +e Thecc1EG015674t1 79 TQTPQQSGLQNMSEKLRRESHCLELSLNHLNGSELNSLKIEDLEELEQQLEYSINKVRARKEQLLKLQMDNLERNVEKMEVENNQLCHWIE 169 5667788899****************************************************************************88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.903 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.71E-38 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-27 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-21 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-17 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.435 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRSKIEMKL IEDTTNRQVT FSKFRAGLLK KAHEVSVLCD AEIGLIIFSS TGELFDYCTQ 60 PLRFHMEQII ERYQLAKGTQ TPQQSGLQNM SEKLRRESHC LELSLNHLNG SELNSLKIED 120 LEELEQQLEY SINKVRARKE QLLKLQMDNL ERNVEKMEVE NNQLCHWIEE KQASSRQQQV 180 PIEANMLEEK QQQVLNQFPF LGEEQPISVL QLVSLPPSRP YLGQPMQSNL QEANTHHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 73 | 1 | 69 | MEF2C |
5f28_B | 3e-18 | 1 | 73 | 1 | 69 | MEF2C |
5f28_C | 3e-18 | 1 | 73 | 1 | 69 | MEF2C |
5f28_D | 3e-18 | 1 | 73 | 1 | 69 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972721.1 | 1e-169 | PREDICTED: MADS-box protein defh21 | ||||
TrEMBL | A0A061GA58 | 1e-173 | A0A061GA58_THECC; MADS-box protein FBP24, putative isoform 1 | ||||
STRING | EOY23934 | 1e-173 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16860 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 5e-43 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG015674t1 |
Entrez Gene | 18606001 |
Publications ? help Back to Top | |||
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