PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG013043t1 | ||||||||
Common Name | TCM_013043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 844aa MW: 96662 Da PI: 7.3737 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.6e-27 | 89 | 191 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +++ +r+ ++t+Cka+++vk++ dgkw+v+++ Thecc1EG013043t1 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqskqdPDNTTGRRSCSKTDCKASMHVKRRPDGKWVVHSF 181 5*******************************************9999999987766554444558999************************ PP FAR1 82 eleHnHelap 91 ++eHnHel p Thecc1EG013043t1 182 VKEHNHELLP 191 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-24 | 89 | 191 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-29 | 289 | 381 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.545 | 569 | 605 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.9E-4 | 579 | 602 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-7 | 580 | 607 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MDIDLRLPSG EQCKEDEEAN GIDNILDGDE KLHNGVVEAG NIAHVGQDVR PEDGVEMNSS 60 AVDMVTFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKSFNRPR ARQSKQDPDN TTGRRSCSKT DCKASMHVKR RPDGKWVVHS 180 FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKNVVGLK NDPKNPFDKG RNLALEAGDV 240 KILLEFFTHM QNINSNFFYA IDLGEDQRLK SLFWVDAKSR HDYSYFCDVV SFDTTYVRNK 300 YKMPLALFIG VNHHYQFMPL GCALVSDDSA ATFSWLMQTW LKAMGGQSPR VIITDQDRIV 360 KSVVAEIFPN THHCFFLWHV LGKVSENLGH VIKQHGNFMA KFEKCIYRSW TEEEFAKRWW 420 KILDRFGLKD DEWMKSLYED RRKWVPTYIM DVLLAGMSMV QRSESVNSFF DKYVHKKTTV 480 QEFLKQYEAI LQDRYEEEAK ANSDSWSKLP TLKSPSPFEK SVAGLYTHTV FKKFQVEVVG 540 AIACHPKPEN HDATSSFFRV QDLEKNQDFI VTLNEMKSEV SCICRLYEYK GYLCRHAMVV 600 LQINGHSAIP SQYILKRWTK EAKSRHLMGD ESEQVQSRVQ RYNDLFQRAM KLIEEGSLSQ 660 ESYYIAFRSL EEAFGNCLSA NTSNKSLAEA VTSPTQGMIC IEEDNQSRST SKTNKKKNPT 720 KKRKGNSEQE VMTVPATDGL QQMDKLSSRS VGLDGYFGAQ TSVQGMVQLN LMAPRDNYYG 780 NQQTIQGLGQ LNTIAASHDG YYGPQQTMPG MGQMDFFRAP GFYIRDDTNV RAAQLHDDAS 840 RHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007036967.2 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_017973538.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A061FWL4 | 0.0 | A0A061FWL4_THECC; Far-red elongated hypocotyls 3 isoform 1 | ||||
STRING | EOY21471 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG013043t1 |
Entrez Gene | 18604429 |