PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG011873t1 | ||||||||
Common Name | TCM_011873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 38590.4 Da PI: 6.7056 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 163 | 209 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Thecc1EG011873t1 163 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 209 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-12 | 163 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-14 | 164 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-15 | 164 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-13 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.83E-5 | 173 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.6E-4 | 245 | 295 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MCGKKEEDQG ECSQAIHNIQ GYQEQLLIQQ HQQMQQHHHQ QQNNDLFGGT RGGLIFPEVS 60 PILPWSLPPV HSFNPAHFNG NQVRDHDPFL VPPPPSSYGA LFNRRAPALQ FAYDGPSTDH 120 LRILSDTLGP VVQPGSAPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL 180 AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEIDELT VDTSDEDGKF 240 LIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VKNVLFITGE EDSSSSGDQQ 300 QQQQQYSVSS IQEALKAVME KTSGDESSAG SVKRQRTNIS ILEHSGQNR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 168 | 173 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC751427 | 1e-156 | KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046318.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_017969969.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_017969970.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 1e-110 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A061EB14 | 0.0 | A0A061EB14_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOY02150 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 7e-89 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG011873t1 |
Entrez Gene | 18610548 |
Publications ? help Back to Top | |||
---|---|---|---|
|