PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011858t1
Common NameTCM_011858
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 292aa    MW: 32620 Da    PI: 6.2262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011858t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05116135120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C  C+k+F+r  n++ H+
  Thecc1EG011858t1 116 FSCAVCNKTFNRYNNMQMHM 135
                       89*****************9 PP
2zf-C2H213.90.00016201223123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  + + ++H +++
  Thecc1EG011858t1 201 FGCRKCGKPFAVRGDWRTHEKNC 223
                       56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-5113137No hitNo description
PfamPF128741.0E-4116135No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5116135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.221116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-5184221No hitNo description
Gene3DG3DSA:3.30.160.606.8E-5187221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQSSSFTYNN ISSRESACYE ADDVEDEDSI ILSLGPPGQG QDISRYPLSY PASNKAPNCP  60
NPTSTDQSGV TVALHIGPPA IETSSSNSND IRSNKLVEGQ YWIPSPAQIL VGPTQFSCAV  120
CNKTFNRYNN MQMHMWGHGS QYRKGPDSLR GTKPASSMLR LPCYCCAEGC KNNIEHPRSR  180
PLKDFRTLQT HYKRKHGAKP FGCRKCGKPF AVRGDWRTHE KNCGKLWFCI CGSDFKHKRS  240
LKDHVRAFGD GHAPHTVEYC EVEEEEEEED DDDDNDEDNE DGSHGPLFFS N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046299.20.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-124ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A061EB250.0A0A061EB25_THECC; C2H2-like zinc finger protein
STRINGEOY021310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-126C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]