PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011687t1
Common NameTCM_011687
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 352aa    MW: 39385.5 Da    PI: 6.7871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011687t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.4e-221053245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      + en+  rqvt++kR++gi+KKA+ELS+LCd+e+ +++fs+tgk
  Thecc1EG011687t1 10 KLENTNGRQVTYAKRKHGIMKKANELSILCDIEIILLMFSPTGK 53
                      6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.446153IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25295IPR002100Transcription factor, MADS-box
CDDcd002666.53E-26282No hitNo description
PRINTSPR004048.0E-18323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQVT YAKRKHGIMK KANELSILCD IEIILLMFSP TGKPSLCSGK  60
RSSIEEIIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVHEFLGTS TQTIEDLTNQ  120
ARLLQTQLSE IHRRLSCWTN LDKINNVEHL GQVEDTLKEY LNQIQAHKEN LGKQQLLSLE  180
CTSQFQNEMH VPFRMGAEQQ LQPLAWIPNN DSRHMALPED PNLITHRDVE CSASSSFGSY  240
SGYFGTAKSS ELSSSGQENG MLNDLSGNPS LQLQLGGQYP YLSYNPNILN DAKFSPVAEM  300
NFQETPADYN VNGVLEGPRA GYDTTQGSWA STSGPCAVTM FDEPLYSRQL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-13192190MEF2C
5f28_B2e-13192190MEF2C
5f28_C2e-13192190MEF2C
5f28_D2e-13192190MEF2C
6byy_A2e-13192190MEF2 CHIMERA
6byy_B2e-13192190MEF2 CHIMERA
6byy_C2e-13192190MEF2 CHIMERA
6byy_D2e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364480.0HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046063.20.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-117AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A061EA580.0A0A061EA58_THECC; AGAMOUS-like 65
STRINGEOY018950.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-104AGAMOUS-like 30
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]