PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006324t1 | ||||||||
Common Name | TCM_006324 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27699.8 Da PI: 9.3153 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.5e-21 | 45 | 91 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr+g++KKA+EL++LC+++va+++fs+ k+y + Thecc1EG006324t1 45 IAKKNHLQVTFSKRRTGLFKKASELCTLCAVDVAIMVFSPGKKVYSF 91 6677888**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.9E-28 | 35 | 94 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-25 | 35 | 108 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.217 | 35 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-15 | 37 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-23 | 44 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-15 | 57 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-15 | 72 | 93 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MCFQDQTHIA HKPIHTDLVS NSSFDFFTMT KNSNMGRQRI TMAKIAKKNH LQVTFSKRRT 60 GLFKKASELC TLCAVDVAIM VFSPGKKVYS FGHPRVESIV DRLLTRTPPL RSSTAHQLFE 120 AHQNASIHEL NIRLTQLLEQ LEIEKRRGDA LDNIRKAGLN QCWWQAPIDE LGLNELERLR 180 IALEEVKQNA AKQANKVLLE SADHKRWQFL AVNGTGHANP FENKDNCICR IIDQAYGYGD 240 GLF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970312.1 | 1e-157 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-49 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A061DWS6 | 0.0 | A0A061DWS6_THECC; Agamous-like MADS-box protein A, putative | ||||
STRING | EOX97244 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-51 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006324t1 |
Entrez Gene | 18607276 |