PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006323t1
Common NameTCM_006323
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28732 Da    PI: 9.8878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006323t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.19.8e-231863449
                      -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+i+fs+  k++ +
  Thecc1EG006323t1 18 KNDSNLQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 63
                      8**************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.731767IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-31766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-28893IPR002100Transcription factor, MADS-box
CDDcd002651.52E-34877No hitNo description
PRINTSPR004045.5E-18929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241763IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAKKQSKGRQ RVEMVKMKND SNLQVTFSKR RAGLFKKASE LCTLCGAEIA IIVFSPGRKV  60
FSFGHPEVEA VTDRYLNMPD PRQTSGTMQL IEAHRNANIR ELNIQLTQVA NRLDSAKKRG  120
EELNQMRKAI QSHCWWAFPF EELSLPQLQK LKTVMEELKK NVASQGNHLL MQRMNTQQFL  180
MGSSSSGEIP YETKNNIVFD ANMMPAGYSA PDMMPEGFSA PNMMPPPPGF NHHPEGYNYP  240
NPLGYNPGFG RGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-16893186Myocyte-specific enhancer factor 2A
3kov_B5e-16893186Myocyte-specific enhancer factor 2A
3kov_I5e-16893186Myocyte-specific enhancer factor 2A
3kov_J5e-16893186Myocyte-specific enhancer factor 2A
3p57_A5e-16893186Myocyte-specific enhancer factor 2A
3p57_B5e-16893186Myocyte-specific enhancer factor 2A
3p57_C5e-16893186Myocyte-specific enhancer factor 2A
3p57_D5e-16893186Myocyte-specific enhancer factor 2A
3p57_I5e-16893186Myocyte-specific enhancer factor 2A
3p57_J5e-16893186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041412.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK24e-62AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A061E4S60.0A0A061E4S6_THECC; Agamous-like MADS-box protein A, putative
STRINGEOX972430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-64AGAMOUS-like 62
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  3. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  4. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  5. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  6. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]