PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005483t1
Common NameTCM_005483
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRF
Protein Properties Length: 529aa    MW: 57186.3 Da    PI: 10.2533
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005483t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.32.8e-23144187245
               WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       +epgrCrRtDGKkWRCs++v++++k+C  H+hrgr+rsrk++e+
  Thecc1EG005483t1 144 PEPGRCRRTDGKKWRCSKNVIPDQKYCAQHMHRGRQRSRKPVES 187
                       8****************************************997 PP
2WRC651.1e-20343380239
               WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 
                        epgrCrRtDGKkWRCsr+v++++k+C rH+hrg ++ 
  Thecc1EG005483t1 343 LEPGRCRRTDGKKWRCSRDVIPDQKYCARHMHRGAKKH 380
                       59********************************6654 PP
3QLQ41.73.6e-1575109337
               QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       FT aQl++L  Q+l+yKy+a + PvP +L+ +i+k
  Thecc1EG005483t1  75 FTTAQLHELQLQALIYKYIAGGIPVPLHLVIPIWK 109
                       *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-673109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.95774109IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-1175108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.136143187IPR014977WRC domain
PfamPF088799.5E-21144186IPR014977WRC domain
PROSITE profilePS5166721.481342386IPR014977WRC domain
PfamPF088792.1E-18344380IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSMLAQPVQ SPPLPDSGGG GGGSGTRERS EEKGGTVKME EKEKRKEGSP SIRLGLGIDG  60
NTTEKPVVKH GKCVFTTAQL HELQLQALIY KYIAGGIPVP LHLVIPIWKS VASSGSAHGG  120
IYDQYPSFVG FSPQGSDYRS MMNPEPGRCR RTDGKKWRCS KNVIPDQKYC AQHMHRGRQR  180
SRKPVESSQF TLPDTTLSKR SNKESENSKN LSATVSSQYT NPSSCNTSTS HERTATTAVD  240
SNNVWSNRNS ISTIATTSTT IITATNNDEK NDCKRNKNFP NTSKKREEKH SVSDNIIINK  300
SSKIGNNATV GNSISPGVGF SPKSVLQVLG CNSSHGYKNE MELEPGRCRR TDGKKWRCSR  360
DVIPDQKYCA RHMHRGAKKH VEVSQPVAVP TIGPPSRLTV ASKAACAVLS TSLSISIPSP  420
HLITQDEKST SSSSETTISD TTITVFENVS LAGADGTGRL LSHGFIGGTR RFHHSNPNSQ  480
TQRTSRALVR VSESATKYLA RAILRVSSGK CTAGEVITTA LVVLVCWS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969696.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A061DTU40.0A0A061DTU4_THECC; Growth-regulating factor 9, putative
STRINGEOX961740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-31growth-regulating factor 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]