PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG005008t2 | ||||||||
Common Name | TCM_005008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 46627.7 Da PI: 4.6739 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.8 | 8.6e-36 | 81 | 203 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhP+d+el+++yL +kv +++ + +vi ev d++++eP++Lp ++++k wy F++r+++ kr +r+tk g+Wk tg++++ Thecc1EG005008t2 81 VGYRFHPSDKELIDHYLWNKVLDRDSAV-QVIGEVagDLCDYEPERLPgFsIRRSNDKVWYLFCRRNHN----KRVKRTTKLGFWKLTGRNRH 168 7************************888.899999999**********64333457789******9885....599***************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +g+kktLvfy+gr pkg+ t Wv+hey+l Thecc1EG005008t2 169 IKA--NVGIGIKKTLVFYEGRVPKGKWTPWVIHEYNL 203 *99..778***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-39 | 77 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.374 | 79 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-22 | 81 | 203 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
NFWRKEFSFL LFKSSFFSPN FNFRGATPLS LVLTEEKYPL FIAGISVWFW FLSSIVFLLS 60 CPFGISSMSD EMSRCSCNDI VGYRFHPSDK ELIDHYLWNK VLDRDSAVQV IGEVAGDLCD 120 YEPERLPGFS IRRSNDKVWY LFCRRNHNKR VKRTTKLGFW KLTGRNRHIK ANVGIGIKKT 180 LVFYEGRVPK GKWTPWVIHE YNLPDTLPNQ GYFLCKLKKK DDEKASIASG EEGQPSNVAD 240 DKISDNSMEI NIEELLAQLE DTNDSNKVGD EVVSLQKPDF DGVQNQSSTN EQDDELYLVS 300 STQQSQIQEE HVPSYNDSTN FCGVDGNFHK IQNQSSTNEQ DDEFYHVSPT RQSQICEEHV 360 SSYNNSIIFC GFNVNFHEVQ NQSSTKEEDD EFWKNIFIDD DDDA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 82 | 220 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 82 | 220 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 82 | 220 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 82 | 220 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-20 | 82 | 220 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-20 | 82 | 220 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 82 | 220 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973800.1 | 0.0 | PREDICTED: uncharacterized protein LOC18613866 | ||||
TrEMBL | A0A061DZT0 | 0.0 | A0A061DZT0_THECC; NAC domain containing 69-like protein isoform 2 (Fragment) | ||||
STRING | EOX95533 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20817 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01550.1 | 3e-40 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG005008t2 |
Entrez Gene | 18613865 |
Publications ? help Back to Top | |||
---|---|---|---|
|