PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004742t1 | ||||||||
Common Name | TCM_004742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARR-B | ||||||||
Protein Properties | Length: 287aa MW: 32599.7 Da PI: 5.9354 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 72.3 | 6.9e-23 | 216 | 268 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQ 51 kpr+ Wt+eLH+ Fv av+qL G +kA+Pk+i +++m+v gLt+++++SHLQ Thecc1EG004742t1 216 KPRMIWTQELHDMFVAAVNQL-GRDKAVPKKIlerMQAMNVTGLTRANIASHLQ 268 79*******************.**********33335789************** PP | |||||||
2 | Response_reg | 69.8 | 1.1e-23 | 33 | 139 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 +livdD+++ + +l+ +l+k y ev++++ +++al+ll+e + +D++++D+ mp+mdGl+ll i e +lp+++++a ++ + + + Thecc1EG004742t1 33 ILIVDDSRTCLLVLEIMLRKLLY-EVTTCRLAKDALALLREDNerFDIVICDLHMPEMDGLKLLDIIGLEM-DLPVVMMSADDKRGVIMKGII 123 8**********************.***************877777**********************6644.8******************** PP TTESEEEESS--HHHH CS Response_reg 92 aGakdflsKpfdpeel 107 Ga d+l+Kp+ + + Thecc1EG004742t1 124 HGACDYLVKPVRLDSI 139 **********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.32E-32 | 30 | 158 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-37 | 30 | 176 | No hit | No description |
SMART | SM00448 | 4.4E-25 | 31 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.447 | 32 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.3E-21 | 33 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.30E-23 | 34 | 140 | No hit | No description |
PROSITE profile | PS51294 | 9.84 | 213 | 275 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 213 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-16 | 213 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-22 | 216 | 272 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-7 | 219 | 268 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDEQNIQISL LKNGCADKVN NSVVGEFPAG LKILIVDDSR TCLLVLEIML RKLLYEVTTC 60 RLAKDALALL REDNERFDIV ICDLHMPEMD GLKLLDIIGL EMDLPVVMMS ADDKRGVIMK 120 GIIHGACDYL VKPVRLDSIR FIWQHVVRRK RRSLGEFQQP GNNVNDRLLK LEQAKHADQM 180 PARDKGSLQS LKRTREDEDE DEDDGEFSDE VTTTKKPRMI WTQELHDMFV AAVNQLGRDK 240 AVPKKILERM QAMNVTGLTR ANIASHLQVT FYFHEIPLTG SGLFQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-15 | 212 | 268 | 1 | 54 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973701.1 | 0.0 | PREDICTED: two-component response regulator ARR1 | ||||
Swissprot | Q9ZWJ9 | 2e-80 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A061DR87 | 0.0 | A0A061DR87_THECC; Response regulator 2, putative | ||||
STRING | EOX95190 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22318 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 6e-78 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004742t1 |
Entrez Gene | 18613636 |