PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004742t1
Common NameTCM_004742
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARR-B
Protein Properties Length: 287aa    MW: 32599.7 Da    PI: 5.9354
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004742t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.36.9e-23216268151
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQ 51 
                       kpr+ Wt+eLH+ Fv av+qL G +kA+Pk+i   +++m+v gLt+++++SHLQ
  Thecc1EG004742t1 216 KPRMIWTQELHDMFVAAVNQL-GRDKAVPKKIlerMQAMNVTGLTRANIASHLQ 268
                       79*******************.**********33335789************** PP

2Response_reg69.81.1e-23331391107
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       +livdD+++ + +l+ +l+k  y ev++++ +++al+ll+e +  +D++++D+ mp+mdGl+ll  i  e  +lp+++++a ++   + + + 
  Thecc1EG004742t1  33 ILIVDDSRTCLLVLEIMLRKLLY-EVTTCRLAKDALALLREDNerFDIVICDLHMPEMDGLKLLDIIGLEM-DLPVVMMSADDKRGVIMKGII 123
                       8**********************.***************877777**********************6644.8******************** PP

                       TTESEEEESS--HHHH CS
      Response_reg  92 aGakdflsKpfdpeel 107
                        Ga d+l+Kp+  + +
  Thecc1EG004742t1 124 HGACDYLVKPVRLDSI 139
                       **********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.32E-3230158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-3730176No hitNo description
SMARTSM004484.4E-2531143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.44732147IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-2133139IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.30E-2334140No hitNo description
PROSITE profilePS512949.84213275IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-22213268IPR009057Homeodomain-like
SuperFamilySSF466894.3E-16213273IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-22216272IPR006447Myb domain, plants
PfamPF002498.2E-7219268IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDEQNIQISL LKNGCADKVN NSVVGEFPAG LKILIVDDSR TCLLVLEIML RKLLYEVTTC  60
RLAKDALALL REDNERFDIV ICDLHMPEMD GLKLLDIIGL EMDLPVVMMS ADDKRGVIMK  120
GIIHGACDYL VKPVRLDSIR FIWQHVVRRK RRSLGEFQQP GNNVNDRLLK LEQAKHADQM  180
PARDKGSLQS LKRTREDEDE DEDDGEFSDE VTTTKKPRMI WTQELHDMFV AAVNQLGRDK  240
AVPKKILERM QAMNVTGLTR ANIASHLQVT FYFHEIPLTG SGLFQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15212268154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973701.10.0PREDICTED: two-component response regulator ARR1
SwissprotQ9ZWJ92e-80ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A061DR870.0A0A061DR87_THECC; Response regulator 2, putative
STRINGEOX951900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.16e-78response regulator 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]