PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002654t6 | ||||||||
Common Name | TCM_002654 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 30048 Da PI: 5.5022 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.2 | 1.8e-25 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ kw+vtk+++eHnH+l+ Thecc1EG002654t6 78 EFYVVYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSLM 168 6******************************************99983333.244899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-23 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MESSSSQGID SDESVRCLQV ENFDEQELVD HDLSDNIELC MGEVDKIIEE STESLPLLSN 60 AVEPYIGMEF KSRDAAREFY VVYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSAK 180 NLISEDEKDQ RIRELTQELN SEKQKCKRRC AAYQEQLRTI LKFVEEHTDQ LSKRVQDIVE 240 NIRELEDAQL EDSDCSYV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049567.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974334.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974337.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974345.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974350.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974355.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974361.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_017974370.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A061DMV3 | 0.0 | A0A061DMV3_THECC; Far-red impaired responsive family protein isoform 1 | ||||
STRING | EOX93728 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-40 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002654t6 |
Entrez Gene | 18612618 |
Publications ? help Back to Top | |||
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