PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002654t2
Common NameTCM_002654
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 259aa    MW: 30048 Da    PI: 5.5022
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002654t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.21.8e-2578168190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY  Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++   ++++    + + tr gC a+l++ +++  kw+vtk+++eHnH+l+
  Thecc1EG002654t2  78 EFYVVYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSLM 168
                       6******************************************99983333.244899********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-2378168IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MESSSSQGID SDESVRCLQV ENFDEQELVD HDLSDNIELC MGEVDKIIEE STESLPLLSN  60
AVEPYIGMEF KSRDAAREFY VVYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK  120
KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSAK  180
NLISEDEKDQ RIRELTQELN SEKQKCKRRC AAYQEQLRTI LKFVEEHTDQ LSKRVQDIVE  240
NIRELEDAQL EDSDCSYV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049567.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974334.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974337.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974345.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974350.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974355.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974361.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_017974370.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A061DMV30.0A0A061DMV3_THECC; Far-red impaired responsive family protein isoform 1
STRINGEOX937280.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-40FAR1 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]