PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002030t1 | ||||||||
Common Name | TCM_002030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 843aa MW: 96549.3 Da PI: 7.0827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.9 | 6.9e-28 | 80 | 166 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r++++++t+Cka+++vk++ dgkw ++++++eHnHel p Thecc1EG002030t1 80 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDVG---SSRRSSVKKTDCKASMHVKRRPDGKWIIHEFVKEHNHELLP 166 9***************************************999877...889999********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-25 | 80 | 166 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.7E-28 | 286 | 379 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.237 | 566 | 602 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.9E-7 | 574 | 601 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-7 | 577 | 604 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MIKVRENQNA ISNMVDCRDA VPCIDGVNEN MVDIVDEAAH GRDGAIVDSS KRAVIGFEGD 60 TDFEPRNGIE FESHEAAYAF YQEYAKSMGF TTSIKNSRRS KKSKEFIDAK FACSRYGVTP 120 ESDVGSSRRS SVKKTDCKAS MHVKRRPDGK WIIHEFVKEH NHELLPALAY HFRIYRNVKL 180 AEKNNIDILN AVSERTRKMY VEMSRQSGGY QNVSLLQNDI KDQFDKGRHL VVDEGDAQIM 240 LEYFKRIKKE NPDFFYAIDL NEEQRLRNLF WVDAKSRKDY ASFSDVVSFD TTYVKFNEKL 300 PFAPFVGVNH HFQSMLLGCA LLADETKPTL VWLMKTWLRA MGGQAPKVII TDQDKALKAA 360 VQEVFPTARH CFALWHILEK IPKSLAHVIG QHENFLPKFN KCIFKSWTDE GFDMRWWKMI 420 TRFELQDDEW VQSLYEDRKR WVPTFMDDVF LAGMSTSQRS ESMNSFFDKY IHKKITLKEF 480 VKQYGAILQN RYEEEAVADF DTWQKQPALK SPSPWEKQMS IVYTHAIFKK FQVEVLGVVG 540 CHPKRENEDE GTITFRVQDC EKDENFLVIW NEEKSEVSCS CHMFEYRGFL CRHAMIVLQM 600 CGRTSIPPCY ILKRWTKDAK SGQSTAEGTD RVQTRVQRYN ELCKQAIELS EEGSLSEESH 660 NIAFRALVEA LKNCVNVNNS CISAVESVGH AHGLRETVEE NQGSLASKSS KKKNTNKKRK 720 GQSEPALMFV DAQDSLQQME NLSSDGISLN GYYGAQQNVQ GLVQLNLMEP PHDGYYVNQQ 780 SMQGLGQLNS IAPSHDSFFG TQQSMHGLGQ LDYRPPASFS YALQDEPQLR STQLHGGVSR 840 HP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049034.2 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A061DMC6 | 0.0 | A0A061DMC6_THECC; FRS (FAR1 Related Sequences) transcription factor family | ||||
STRING | EOX93191 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002030t1 |
Entrez Gene | 18612264 |