PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34826-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 466aa    MW: 49165.6 Da    PI: 5.2246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34826-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-10247294455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  TRIUR3_34826-P1 247 SHSLAERVRREKIGERMKLLQSLVPSC----NKITGKALMLDEIINYVQSLQ 294
                      8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16241311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.32E-10241298No hitNo description
Gene3DG3DSA:4.10.280.101.5E-16243314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MANEHFFPGE YLSSGFEAAA AMAFGLPWVD QHLPVDSSAT TAHFDSALSS LVSSPASATA  60
GGGLGFAHGG EDDVAIGDLI GRLGSICNGA SANNSCYSTP ISSPPRGAPQ AFRGYGAIAA  120
LETGRLSRVS SSKSLVGNTS GVAATAPLDQ NAQLEMSPET DSQPAMQEPP TKKGAAGSAR  180
KRKAAPAKGK AKASLPAMAA MNTSPPKRPR VADGGDEENA GAVEEEKAEP AKDYIHVRAR  240
RGQATDSHSL AERVRREKIG ERMKLLQSLV PSCNKITGKA LMLDEIINYV QSLQRQVEFL  300
SMKLSTMNPQ LELDEQYIPS KEGDNLAHNY FQMNQMAVPG FSYAGSPVAV AAGHGHGAEV  360
EGTFSWEQDL QRVVQMGGAS SSHSQQPQAF YGENFNNATK LTTDRFSRGE GKAEGSSGRG  420
GGCNDECIIN VLEDSGRQVG KDGVVKSRFG VLEDELLKQV GDDEEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618140.0AK361814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1150A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162177.10.0transcription factor bHLH62-like isoform X2
TrEMBLT1NVE10.0T1NVE1_TRIUA; Uncharacterized protein
STRINGTRIUR3_34826-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-45bHLH family protein